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AT4G25450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : non-intrinsic ABC protein 8
Curator
Summary (TAIR10)
member of NAP subfamily
Computational
Description (TAIR10)
non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380; Bacteria - 322963; Metazoa - 9904; Fungi - 7465; Plants - 5560; Viruses - 14; Other Eukaryotes - 63700 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25450-MONOMERBioCyc:ARA:GQT-1791-MONOMERBioCyc:ARA:GQT-1792-MONOMEReggNOG:COG1132
eggNOG:KOG0055EMBL:AK175205EMBL:AK175416EMBL:AK175486
EMBL:AK175939EMBL:AK176078EMBL:AK176118EMBL:AK176612
EMBL:AK220751EMBL:AL022197EMBL:AL161563EMBL:AY094470
EMBL:CP002687EnsemblPlants:AT4G25450EnsemblPlants:AT4G25450.1entrez:828650
ExpressionAtlas:Q8LPQ6Gene3D:3.40.50.300GeneID:828650Genevisible:Q8LPQ6
GO:GO:0005215GO:GO:0005524GO:GO:0009507GO:GO:0009941
GO:GO:0016020GO:GO:0016021GO:GO:0042626GO:GO:0055085
hmmpanther:PTHR24221hmmpanther:PTHR24221:SF169InParanoid:Q8LPQ6InterPro:IPR003439
InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871InterPro:IPR027417
iPTMnet:Q8LPQ6KEGG:ath:AT4G25450OMA:FDKSEWAPaxDb:Q8LPQ6
Pfam:PF00005Pfam:PF00664Pfam:Q8LPQ6Pfscan:PS50893
Pfscan:PS50929PhylomeDB:Q8LPQ6PIR:T05802PRIDE:Q8LPQ6
PRO:PR:Q8LPQ6PROSITE:PS00211PROSITE:PS50893PROSITE:PS50929
ProteinModelPortal:Q8LPQ6Proteomes:UP000006548RefSeq:NP_001031714.1RefSeq:NP_194275.2
scanprosite:PS00211SMART:SM00382SMR:Q8LPQ6STRING:3702.AT4G25450.1
SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT4G25450tair10-symbols:ATNAP8
tair10-symbols:NAP8TMHMM:TMhelixUniGene:At.32254UniProt:Q8LPQ6
Coordinates (TAIR10) chr4:-:13009845..13013912
Molecular Weight (calculated) 77930.90 Da
IEP (calculated) 9.30
GRAVY (calculated) 0.21
Length 714 amino acids
Sequence (TAIR10)
(BLAST)
001: MASATTLLFH HGSTRVLVAR RRCQASVLRP YGGLKPFLSF CSLPNSTAPF RDSLRAKSDG LARAYVTGAP PIVEEPDPKI EESKSEAESK DLISWGLLWS
101: LMSKHKLRLS VCLLTLLGCS TCTLSMPVFS GRFFEVLIGV RPEPLWRLLS KIAVLYSLEP IFTIAFVTNM TAIWENVMAI LRAQIFRRVL IQKAEFFDKY
201: KVGELTGLLT SDLGALNSIV NDNISRDRGF RAFTEVFGTI CILFTLSPQL APVLGLLMLA VSVLVAVYKR STVPVYKSHG LAQATMSDCV SETFSAIRTV
301: RSFSGEKRQM SIFGSQILAY KLSGLKLGTF KSINESITRV AVYISLLALY CLGGSKVKTG ELAVGTVVSF IGYTFTLTFA VQGLVNTFGD LRGTFAAIDR
401: INSILNAVDI DEALAYGLER DIHTKKVQDE NLKLFLSAGP NVNIRHLDKY YMSNLKSTNN LRTLTWAGDV CLDDVHFAYP LRPDVKVLDG LSLTLNSGTV
501: TALVGSSGAG KSTIVQLLAR FYEPTQGRIT VGGEDVRMFD KSEWAKVVSI VNQEPVLFSL SVAENIAYGL PNEHVSKDDI IKAAKAANAH DFIISLPQGY
601: DTLVGERGGL LSGGQRQRVA IARSLLKNAP ILILDEATSA LDAVSERLVQ SALNRLMKDR TTLVIAHRLS TVQSANQIAV CSDGKIIELG THSELVAQKG
701: SYASLVGTQR LAFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)