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AT4G17300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.
Computational
Description (TAIR10)
NS1; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19374 Blast hits to 17086 proteins in 2835 species: Archae - 447; Bacteria - 14373; Metazoa - 505; Fungi - 670; Plants - 294; Viruses - 0; Other Eukaryotes - 3085 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17300-MONOMEREC:6.1.1.22eggNOG:COG0017eggNOG:KOG0554
EMBL:AJ222644EMBL:AL161546EMBL:AY078967EMBL:CP002687
EMBL:Z97343EnsemblPlants:AT4G17300EnsemblPlants:AT4G17300.1entrez:827443
ExpressionAtlas:O48593Gene3D:2.40.50.140GeneID:827443Genevisible:O48593
GO:GO:0003677GO:GO:0004816GO:GO:0005524GO:GO:0005739
GO:GO:0006421GO:GO:0009507GO:GO:0009570GO:GO:0048481
Gramene:AT4G17300.1gramene_pathway:6.1.1.22gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00534
hmmpanther:PTHR22594hmmpanther:PTHR22594:SF6HOGENOM:HOG000226033InParanoid:O48593
InterPro:IPR002312InterPro:IPR004364InterPro:IPR004365InterPro:IPR004522
InterPro:IPR006195InterPro:IPR012340InterPro:IPR018150KEGG:00970+6.1.1.22
KEGG:ath:AT4G17300KO:K01893ncoils:CoilOMA:WWYLDTR
PANTHER:PTHR22594PANTHER:PTHR22594:SF6PaxDb:O48593Pfam:O48593
Pfam:PF00152Pfam:PF01336Pfscan:PS50862PhylomeDB:O48593
PRIDE:O48593PRINTS:PR01042PRO:PR:O48593PROSITE:PS50862
ProteinModelPortal:O48593Proteomes:UP000006548RefSeq:NP_193462.1SMR:O48593
STRING:3702.AT4G17300.1SUPFAM:SSF50249SUPFAM:SSF55681TAIR:AT4G17300
tair10-symbols:ATNS1tair10-symbols:NS1tair10-symbols:OVA8TIGRfam:TIGR00457
TIGRFAMs:TIGR00457UniGene:At.123UniGene:At.26556UniProt:O48593
UniProt:Q564D6
Coordinates (TAIR10) chr4:+:9681558..9684833
Molecular Weight (calculated) 63701.70 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.26
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR FGSKVGEFRK KLRIAEVKGG
101: ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ KVELKVEKII VVGECDSSYP
201: IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT DTSIDAIPKT KGGLIDWSQD
301: FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN CKEDMEFFDT WIEKGIIRRL
401: SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA MDMLVPRIGE LIGGSQREER
501: LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)