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AT2G45770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : signal recognition particle receptor protein, chloroplast (FTSY)
Curator
Summary (TAIR10)
chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.
Computational
Description (TAIR10)
CPFTSY; FUNCTIONS IN: nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, protein targeting, thylakoid membrane organization, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: chloroplast signal recognition particle 54 kDa subunit (TAIR:AT5G03940.1); Has 16847 Blast hits to 16846 proteins in 2926 species: Archae - 468; Bacteria - 10588; Metazoa - 346; Fungi - 290; Plants - 258; Viruses - 1; Other Eukaryotes - 4896 (source: NCBI BLink).
Protein Annotations
BioGrid:4521eggNOG:COG0552eggNOG:ENOG410IQAYEMBL:AC004665
EMBL:AF120112EMBL:AF360125EMBL:AJ010820EMBL:AY051026
EMBL:CP002685EnsemblPlants:AT2G45770EnsemblPlants:AT2G45770.1entrez:819185
EvolutionaryTrace:O80842Gene3D:3.40.50.300GeneID:819185GO:GO:0005525
GO:GO:0006614GO:GO:0009535GO:GO:0009570GO:GO:0046872
hmmpanther:PTHR11564hmmpanther:PTHR11564:SF15HOGENOM:HOG000036278InParanoid:O80842
IntAct:O80842InterPro:IPR000897InterPro:IPR003593InterPro:IPR004390
InterPro:IPR013822InterPro:IPR027417iPTMnet:O80842KEGG:ath:AT2G45770
KO:K03110MINT:MINT-7993024PaxDb:O80842PDB:2OG2
PDB:3B9QPDBsum:2OG2PDBsum:3B9QPfam:O80842
Pfam:PF00448Pfam:PF02881PhylomeDB:O80842PIR:T02470
PIR:T52612PRIDE:O80842PRO:PR:O80842PROSITE:PS00300
ProteinModelPortal:O80842Proteomes:UP000006548RefSeq:NP_001189754.1RefSeq:NP_566056.1
scanprosite:PS00300SMART:SM00382SMART:SM00962SMART:SM00963
SMR:O80842STRING:3702.AT2G45770.2SUPFAM:SSF47364SUPFAM:SSF52540
TAIR:AT2G45770tair10-symbols:CPFTSYtair10-symbols:FRD4TCDB:3.A.5.1.2
TIGRfam:TIGR00064TIGRFAMs:TIGR00064UniGene:At.491UniProt:O80842
Coordinates (TAIR10) chr2:+:18851248..18853402
Molecular Weight (calculated) 39681.30 Da
IEP (calculated) 7.86
GRAVY (calculated) 0.01
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)