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AT2G39080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 818 Blast hits to 811 proteins in 372 species: Archae - 18; Bacteria - 637; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHZ7eggNOG:ENOG4111G8SEMBL:AY065091EMBL:AY114557
EMBL:CP002685EnsemblPlants:AT2G39080EnsemblPlants:AT2G39080.1entrez:818494
Gene3D:3.40.50.720GeneID:818494GO:GO:0009507GO:GO:0009570
Gramene:AT2G39080.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF389InterPro:IPR016040
KEGG:ath:AT2G39080OMA:HVIFCAPPhylomeDB:Q8VZB1Proteomes:UP000006548
RefSeq:NP_181441.3SMR:Q8VZB1STRING:3702.AT2G39080.1SUPFAM:SSF51735
TAIR:AT2G39080UniGene:At.13251UniProt:Q8VZB1
Coordinates (TAIR10) chr2:-:16309981..16312475
Molecular Weight (calculated) 38212.20 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.28
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFISCISFP TINSRILSTH HFSKHSTSAS SSYSLKFALR RQEDKPKVSF FLPLTSSLMA TPIQASSSST IGETSDGLKV QSHVSIGAND LLIVGPGVLG
101: RLVAEQWRQE HPESQIFGQT VTTNHHGELE NLGIKPSLKG TEYGGKFSYV IFCAPPSQSA DYAGEVRNAA SNWNGEGSFL FTSSSAPYDC FDNGECNEDS
201: PVVPLGKSPR TDVLLKAEKV VLECGGTVLR LAGLYTETRG AHTYWLSKET IDARPDHILN LIHYEDAASL AVAIMKKKAG ARIFLGCDNH PLSRQEVMDL
301: MAQSGKFDKK FKGFTSTSGP LGKKLNNSKT RAEIGWEPKY PSFAQFFGVS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)