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AT1G69740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase superfamily protein
Curator
Summary (TAIR10)
Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.
Computational
Description (TAIR10)
HEMB1; FUNCTIONS IN: porphobilinogen synthase activity, catalytic activity, metal ion binding; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Tetrapyrrole biosynthesis, porphobilinogen synthase (InterPro:IPR001731); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G44318.1); Has 6820 Blast hits to 6820 proteins in 2111 species: Archae - 162; Bacteria - 3714; Metazoa - 160; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2538 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2417-MONOMERBioGrid:28531EC:4.2.1.24eggNOG:COG0113
eggNOG:KOG2794EMBL:AC013289EMBL:AF327428EMBL:AF361803
EMBL:AY059154EMBL:AY081254EMBL:AY113941EMBL:AY120705
EMBL:AY128711EMBL:CP002684EnsemblPlants:AT1G69740EnsemblPlants:AT1G69740.1
EnsemblPlants:AT1G69740.2entrez:843310Gene3D:3.20.20.70GeneID:843310
Genevisible:Q9SFH9GO:GO:0004655GO:GO:0005829GO:GO:0006779
GO:GO:0006782GO:GO:0006783GO:GO:0008270GO:GO:0009507
GO:GO:0009570GO:GO:0015995Gramene:AT1G69740.1Gramene:AT1G69740.2
gramene_pathway:4.2.1.24gramene_pathway:PWY-5188gramene_plant_reactome:4827054gramene_plant_reactome:6877150
hmmpanther:PTHR11458HOGENOM:HOG000020323InParanoid:Q9SFH9InterPro:IPR001731
InterPro:IPR013785InterPro:IPR030656KEGG:00860+4.2.1.24KEGG:ath:AT1G69740
KO:K01698OMA:MDPANSNPANTHER:PTHR11458PaxDb:Q9SFH9
Pfam:PF00490Pfam:Q9SFH9PhylomeDB:Q9SFH9PIR:D96719
PRIDE:Q9SFH9PRINTS:PR00144PRO:PR:Q9SFH9PROSITE:PS00169
ProteinModelPortal:Q9SFH9Proteomes:UP000006548Reactome:R-ATH-189451RefSeq:NP_001077800.1
RefSeq:NP_177132.1scanprosite:PS00169SMART:SM01004SMR:Q9SFH9
STRING:3702.AT1G69740.1SUPFAM:SSF51569TAIR:AT1G69740tair10-symbols:HEMB1
UniGene:At.10020UniGene:At.21048UniPathway:UPA00251UniPathway:UPA00668
UniProt:Q9SFH9
Coordinates (TAIR10) chr1:+:26232197..26234713
Molecular Weight (calculated) 46693.00 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.22
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTPIFNAS CSFPSTRGID CKSYIGLRSN VSKVSVASSR IATSQRRNLV VRASESGNGH AKKLGMSDAE CEAAVAAGNV PEAPPVPPKP AAPVGTPIIK
101: PLNLSRRPRR NRASPVTRAA FQETDISPAN FVYPLFIHEG EEDTPIGAMP GCYRLGWRHG LVQEVAKARA VGVNSIVLFP KVPEALKNST GDEAYNDNGL
201: VPRTIRLLKD KYPDLIIYTD VALDPYSSDG HDGIVREDGV IMNDETVHQL CKQAVSQARA GADVVSPSDM MDGRVGAIRS ALDAEGFQNV SIMSYTAKYA
301: SSFYGPFREA LDSNPRFGDK KTYQMNPANY REALIEARED EAEGADILLV KPGLPYLDII RLLRDKSPLP IAAYQVSGEY SMIKAGGVLK MIDEEKVMME
401: SLMCLRRAGA DIILTYFALQ AATCLCGEKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)