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AT5G63570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate-1-semialdehyde-2,1-aminomutase
Curator
Summary (TAIR10)
Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.
Computational
Description (TAIR10)
glutamate-1-semialdehyde-2,1-aminomutase (GSA1); FUNCTIONS IN: glutamate-1-semialdehyde 2,1-aminomutase activity; INVOLVED IN: response to light stimulus, porphyrin biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase (InterPro:IPR004639), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate-1-semialdehyde 2,1-aminomutase 2 (TAIR:AT3G48730.1); Has 34880 Blast hits to 34874 proteins in 2819 species: Archae - 734; Bacteria - 23560; Metazoa - 547; Fungi - 812; Plants - 385; Viruses - 2; Other Eukaryotes - 8840 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63570-MONOMERBioCyc:MetaCyc:AT5G63570-MONOMERBioGrid:21718EC:5.4.3.8
eggNOG:COG0001eggNOG:ENOG410IPFVEMBL:AB005234EMBL:AY102109
EMBL:AY139804EMBL:CP002688EMBL:U03773EnsemblPlants:AT5G63570
EnsemblPlants:AT5G63570.1entrez:836476Gene3D:3.40.640.10Gene3D:3.90.1150.10
GeneID:836476Genevisible:P42799GO:GO:0006782GO:GO:0008483
GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0015995
GO:GO:0030170GO:GO:0042286GO:GO:0042802GO:GO:0048046
Gramene:AT5G63570.1gramene_pathway:5.4.3.8gramene_pathway:PWY-5188gramene_plant_reactome:4827054
gramene_plant_reactome:6877139HAMAP:MF_00375hmmpanther:PTHR11986hmmpanther:PTHR11986:SF84
HOGENOM:HOG000020210InParanoid:P42799IntAct:P42799InterPro:IPR004639
InterPro:IPR005814InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424
KEGG:00860+5.4.3.8KEGG:ath:AT5G63570KO:K01845OMA:EFAELIC
PANTHER:PTHR11986PaxDb:P42799Pfam:P42799Pfam:PF00202
PhylomeDB:P42799PRIDE:P42799PRO:PR:P42799PROSITE:PS00600
ProteinModelPortal:P42799Proteomes:UP000006548RefSeq:NP_201162.1scanprosite:PS00600
SMR:P42799STRING:3702.AT5G63570.1SUPFAM:SSF53383TAIR:AT5G63570
tair10-symbols:GSA1TIGRfam:TIGR00713TIGRFAMs:TIGR00713UniGene:At.27758
UniPathway:UPA00251UniPathway:UPA00668UniProt:P42799
Coordinates (TAIR10) chr5:+:25451957..25453620
Molecular Weight (calculated) 50372.70 Da
IEP (calculated) 6.86
GRAVY (calculated) 0.01
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)