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AT1G53025.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-conjugating enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-conjugating enzyme family protein; FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 25 (TAIR:AT3G15355.1).
Protein Annotations
BioCyc:ARA:AT1G53025-MONOMEREC:2.3.2.23eggNOG:ENOG410XP8CeggNOG:KOG0895
EMBL:AC022520EMBL:AK117792EMBL:AK176042EMBL:BT005918
EMBL:CP002684EMBL:DQ027039EnsemblPlants:AT1G53025EnsemblPlants:AT1G53025.1
entrez:10723113Gene3D:3.10.110.10GeneID:10723113GO:GO:0005524
GO:GO:0016567GO:GO:0016740Gramene:AT1G53025.1hmmpanther:PTHR24067
hmmpanther:PTHR24067:SF100HOGENOM:HOG000237682InParanoid:Q8GY87IntAct:Q8GY87
InterPro:IPR000608InterPro:IPR016135KEGG:ath:AT1G53025KO:K10581
OMA:WAGSAREPaxDb:Q8GY87Pfam:PF00179Pfam:Q8GY87
Pfscan:PS50127PIR:G96570PRO:PR:Q8GY87PROSITE:PS50127
ProteinModelPortal:Q8GY87Proteomes:UP000006548RefSeq:NP_001185207.1SMR:Q8GY87
STRING:3702.AT1G53025.1SUPFAM:SSF54495TAIR:AT1G53025UniGene:At.37482
UniPathway:UPA00143UniProt:Q8GY87
Coordinates (TAIR10) chr1:-:19757072..19759474
Molecular Weight (calculated) 60555.30 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.54
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)