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AT3G53390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G37160.1); Has 13890 Blast hits to 8004 proteins in 489 species: Archae - 30; Bacteria - 3923; Metazoa - 4011; Fungi - 2926; Plants - 1297; Viruses - 0; Other Eukaryotes - 1703 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2319eggNOG:KOG2394EMBL:CP002686EnsemblPlants:AT3G53390
EnsemblPlants:AT3G53390.1entrez:824507Gene3D:2.130.10.10GeneID:824507
Gramene:AT3G53390.1hmmpanther:PTHR14107InParanoid:F4JAE0InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986iPTMnet:F4JAE0KEGG:ath:AT3G53390
OMA:ASSRCTCPaxDb:F4JAE0Pfam:PF00400Pfscan:PS50082
Pfscan:PS50294PRIDE:F4JAE0PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:F4JAE0Proteomes:UP000006548RefSeq:NP_190907.2SMART:SM00320
SMR:F4JAE0STRING:3702.AT3G53390.1SUPFAM:SSF50978TAIR:AT3G53390
UniGene:At.23080UniProt:F4JAE0
Coordinates (TAIR10) chr3:+:19792781..19796428
Molecular Weight (calculated) 59881.80 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.39
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNTSNGMIS APSSSSSPAA NPQSPGIKTY FKTPEGKYKL HYEKTHSSGL LHYAHGKTVT QVTIAQLKER AAPSTPTGTS SGYSASSGFR SATARLLGTG
101: NGSRALSFVG GNGGGKSVST SSRISGSFAA SNSNTSMTNT NFDGKGTYLV FNVSDAIFIC DLNSQEKDPV KSIHFSNSNP MCHAFDPDAK DGHDLLIGLN
201: SGDVYTVSLR QQLQDVSKKL VGALHYNKDG SVNNSRCTSI SWVPGGDGAF VVAHADGNLY VYEKNKDGAT ESTFPAIRDP TQFSVDKAKY SKSNPVARWH
301: ICQGSINSIA FSNDGAHLAT VGRDGYLRIF DFLTQKLVCG GKSYYGALLC CSWSMDGKYI LTGGEDDLVQ VWSMEDRKVV AWGEGHNSWV SGVAFDSNWS
401: SPNSDGSGEH VMYRFGSVGQ DTQLLLWDLE MDEIVVPLRR APGGSPTYST GSSAHWDNVI PMGTLQPAPC KRDVPKLSPI IAHRVHTEPL SGLMFTQESV
501: VTACREGHIK IWTRPSESET QTNSSEANPT TALLSTSFTK DNKASLSSKI ISGSTFKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)