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AT1G35470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.576
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SPla/RYanodine receptor (SPRY) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09340.1); Has 1199 Blast hits to 1140 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 329; Plants - 180; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
Protein Annotations
DNASU:840440eggNOG:ENOG410XPCCeggNOG:KOG1477EMBL:AY070090
EMBL:AY096710EMBL:CP002684EnsemblPlants:AT1G35470EnsemblPlants:AT1G35470.1
entrez:840440ExpressionAtlas:Q8VYQ8GeneID:840440Gramene:AT1G35470.1
hmmpanther:PTHR12864hmmpanther:PTHR12864:SF14HOGENOM:HOG000012740InterPro:IPR001870
InterPro:IPR003877InterPro:IPR006594InterPro:IPR006595InterPro:IPR013144
InterPro:IPR013320InterPro:IPR024964KEGG:ath:AT1G35470Pfam:PF00622
Pfam:PF10607Pfscan:PS50188Pfscan:PS50896Pfscan:PS50897
PhylomeDB:Q8VYQ8PROSITE:PS50188PROSITE:PS50896PROSITE:PS50897
Proteomes:UP000006548RefSeq:NP_174777.2SMART:SM00449SMART:SM00668
SMART:SM00757SMR:Q8VYQ8STRING:3702.AT1G35470.2SUPFAM:SSF49899
TAIR:AT1G35470UniGene:At.27631UniProt:Q8VYQ8
Coordinates (TAIR10) chr1:-:13051636..13054922
Molecular Weight (calculated) 52096.60 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.50
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSPPPANS ANGDTTNNGE NGQDLNLNFL DKIRLSAKRD AKEDEGEELP TELNTINSAG GFLVVSPDKL SVKYTNTNLH GHDVGVVQAN KPAPIKCLTY
101: YFEIFVKDSG IKGQIAIGFT KESFKMRRQP GWEVNSCGYH GDDGYLYRGQ GKGEPFGPKF TKDDAVGGGI NYASQEFFFT KNGTIVGKIP KDIRGHLFPT
201: VAVHSQNEEV LVNFGKKKFA FDIKGYEASE RNKQQLAIEK ISIPPNIGYG LVKTYLLHYG YEETLDAFNL ATKNTVPPIH IDQENAIDED DSSYALKQRK
301: NLRQLVRNGE IDTALAELQK LYPQIVQDDK SVVCFLLHCQ KFIELVGKLE EGVNYGRLEL AKFVGLTGFQ DIVEDCFALL AYEKPEESSV WYFLEDSQRE
401: LVADAVNAAI LSTNPNKKDV QRSCHLQSHL EKLLRQLTVC CLERRSLNGD QGETFRLRHV LNNNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)