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AT1G09520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.897
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1I9eggNOG:ENOG410YRFCEMBL:AC003970EMBL:AY052260
EMBL:BT002304EMBL:CP002684EnsemblPlants:AT1G09520EnsemblPlants:AT1G09520.1
entrez:837478GeneID:837478Gramene:AT1G09520.1hmmpanther:PTHR34451
hmmpanther:PTHR34451:SF2HOGENOM:HOG000215002InterPro:IPR019786KEGG:ath:AT1G09520
OMA:STERCDDPhylomeDB:O80535PIR:G86228PROSITE:PS01359
Proteomes:UP000006548RefSeq:NP_563845.1scanprosite:PS01359STRING:3702.AT1G09520.1
TAIR:AT1G09520UniGene:At.23586UniGene:At.71358UniProt:O80535
Coordinates (TAIR10) chr1:-:3071248..3072030
Molecular Weight (calculated) 28026.00 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.47
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLPSSTTAT STSATSDAAA NSTERCDDCG SSDAWVIHTV RLRASLRFFC THCLLRNHPA SFCPGCFALY DSSPPSFRRV SCSIKGCHSL THIHCAGDES
101: HLSYLCPPCR DPNSFSFFRP IVDENGSRFV DKALSEAFLC AAKIAASSMN KAVMTAKCET DRRGKEAALA KKRAREALEQ VVMLDAKEKA RSVVPKLKEA
201: PVDQKPKLSP ASNGATVKET ESSDTTTTPT TTTTKNNGGT EKQNPATQLA KVKQEADASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)