AT1G56460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HIT zinc finger ;PAPA-1-like conserved region | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HIT zinc finger ;PAPA-1-like conserved region; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger ;PAPA-1-like conserved region (TAIR:AT2G47350.1); Has 6888 Blast hits to 5170 proteins in 562 species: Archae - 10; Bacteria - 621; Metazoa - 2515; Fungi - 857; Plants - 398; Viruses - 26; Other Eukaryotes - 2461 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21146765..21149468 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55765.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.73 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.10 | ||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLGGIGFS NTSSATKKKR STTLRRPWND RQLQDSSSLP STPVADNNEN KIEEREAVES DEGSTNGSFQ GSNQVRQGGG HSTASTEGFL VPSKKKDTID 101: TTERRAGFDE NIIKKVKLKL GGSSKTINII SASDGASDIG LCSTKSSHAS DDALGIGQTY QEISNERSTK LRGTPLDTAS KSDSCNDTRD SKANTNPIRK 201: SNRISKRRVL DEELDSLDDD DEEIQFLRRM KMAKVVAVEE DVDDDEDRTR KHKKLSKVMK QNVEFPRGVG TSEKSAKKDK MGKAFDDADY VKDDDEEEEE 301: AVSDVELENK SARTRRGAEE GQSEVKTEMT VTTRRRSGHS GNLIEFPRGL PPAPPRKRKE NGLEVDQQLK KAEAAQRRKL QVEKAARESE AEAIRKILGQ 401: DSSRKKKEDK IKKRQEDKAK EKAADSIARR SDTVKWVMGP SGTIVTFPEE LGLPSIFNST PHSYPPPRER CAGPECTNPY KYRDSESNLP LCSLRCYKAI 501: KG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)