AT3G15920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.873 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phox (PX) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phox (PX) domain-containing protein; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: Phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 39660 Blast hits to 24703 proteins in 1619 species: Archae - 570; Bacteria - 4339; Metazoa - 20583; Fungi - 3176; Plants - 1789; Viruses - 109; Other Eukaryotes - 9094 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5383768..5386955 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85635.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||
| Length | 755 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLYAHDLSL LDFNYNVSGP FGEPLSHRFL SPGPFFQGEE DDYRRNTSYS HDGANGREPD TDSRASPPHR HDGRSPLPLG MDWSSPPRHL EGRDTVWPHD 101: HRTGWSYCVT VPSWVDLPKS SVSDPAVFYR VQVAIQSPEG ITSARLVLRR FNDFLELYSS IKKEFVKKSL PQAPPKKILR MRNQTLLEER RCSLEDWMNR 201: LLSDIDISRS ALIATFLELE AAVRSYFNDE YQETEDTSGD IPSLLPTTIS DVPGSSSVTI DHDNDSADET SNASTMKHDE ANLKNLFSRN STAVDNVTDW 301: HELITEYGLL DQSSFQEKVE RLSSTNGDAA TGTVTRGGIS SGVGIQRLDG SDRKFQELTI ESIKKTHVSD FEASTAVEPD LVNQGAMDIH GEAHGNMYGA 401: VGGDTETQKD LAIVFQSEER HKLKRVIDTL KQRLETAKAD TEDLISRLNQ ELAVRQFLST KVRDLEVELE TTRESCKQGM EKTVLDEKER FTQIQWDMEE 501: LRKQCMEMES FLNSIKDEKT HIETANESLV QENQMLLQQI NDIRENFENF HKEHEELEVK AKAELKVLVK EVKSLRTTQS DLRQELSGIM KEKLEMERIV 601: QREKDREETA KNADKKLLHE CDVLQNRLQE CNVKFDIEEE GKLIMDSSSL SEAIELLATS DNRIGLLIAE TQLLSEEVEK LKLTSGGHRG TDDLVRKMLT 701: EVLIDNARLR KQVNSVLRCS LSGHGISVRE AGTEVDDEEG SIDLARTVMS KILEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)