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AT3G19770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar sorting protein 9 (VPS9) domain
Curator
Summary (TAIR10)
Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.
Computational
Description (TAIR10)
VPS9A; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: cell plate assembly, transport, cell wall biogenesis, post-embryonic root development, embryo development; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 1001 Blast hits to 992 proteins in 208 species: Archae - 0; Bacteria - 4; Metazoa - 518; Fungi - 219; Plants - 81; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).
Protein Annotations
BioGrid:6846eggNOG:ENOG410YGAZeggNOG:KOG2319EMBL:AB025631
EMBL:AP000417EMBL:AY045810EMBL:AY079338EMBL:CP002686
EnsemblPlants:AT3G19770EnsemblPlants:AT3G19770.1entrez:821514EvolutionaryTrace:Q9LT31
ExpressionAtlas:Q9LT31GeneID:821514Genevisible:Q9LT31GO:GO:0000919
GO:GO:0005089GO:GO:0005096GO:GO:0005525GO:GO:0005634
GO:GO:0005829GO:GO:0009793GO:GO:0016020GO:GO:0042546
GO:GO:0043547GO:GO:0048528hmmpanther:PTHR23101hmmpanther:PTHR23101:SF25
HOGENOM:HOG000029999InParanoid:Q9LT31InterPro:IPR003123iPTMnet:Q9LT31
ncoils:CoilOMA:TFSNREPPaxDb:Q9LT31PDB:2EFC
PDB:2EFDPDB:2EFEPDB:2EFHPDB:4G01
PDBsum:2EFCPDBsum:2EFDPDBsum:2EFEPDBsum:2EFH
PDBsum:4G01Pfam:PF02204Pfam:Q9LT31Pfscan:PS51205
PhylomeDB:Q9LT31PRIDE:Q9LT31PRO:PR:Q9LT31PROSITE:PS51205
ProteinModelPortal:Q9LT31Proteomes:UP000006548RefSeq:NP_566645.1SMART:SM00167
SMR:Q9LT31STRING:3702.AT3G19770.1SUPFAM:0044157TAIR:AT3G19770
tair10-symbols:ATVPS9Atair10-symbols:VPS9tair10-symbols:VPS9AUniGene:At.22893
UniProt:Q9LT31
Coordinates (TAIR10) chr3:+:6866916..6869114
Molecular Weight (calculated) 57900.70 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.57
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)