AT3G58110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905 proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa - 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes - 1107 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21516775..21519129 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 90156.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.38 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||
| Length | 784 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSPPSDPT DRDAETLSQN PSLIEKPSVV EQGSLSVENV AEKALNLEST QDEETQNLQD LEESDGRDQQ LEASLEESRN EEDDMDTTQA VSSSYYRRGG 101: GPKRKKGNQK KRKQLEKSKE KLEVLLKTLK PIAFAPCKTL DFARHEKLLK TLGLWDFVHL DFDQNIREDL VANLVAYYNS ERRCSYVNGA RINVSRPDLA 201: RALKLPMKKD FVVTEEEREL LENDESVRFI DEIVSTCVLL QRDDMWIMPV EIVEWTRDIK QKHLEKLDWP KLLWFMVEKE LKAEPPLGDC FFASHLQLLI 301: KSQKEDLLKE KCKADDEEDD DDDDDDVKEV DFLVKSPKED CLEVKEEDVG AADSRKDDGA VDLKEDKYVE EHMLELNLGQ ETVSEMVSGE ERGPVEGQPM 401: DVEENKKEED ERWAWNGDSH AGSHFLRRCN HSSAREGDED NHIEGSMEMG EDEPIEDVEE EETEEDTEKH EGGFPFFPNG DSLQGVGQGN LMLGDASPLG 501: YNSGLQIHGN SIGGDFLASR GEMHMAMGSG SSSLFGNGNN KREIEHENGI TYHSHNPINK RLRTEEPSWD EKPPPVDMCL DQMAYWAEKA RLSFAEKDRE 601: REQSVINQQY LMNELQSKTA MIQELERTKF EEQQRKDIMI YKLESELRMM TSVVEGYRKA LKITQKASRE HRKRCPLRDD KQVYMDVKGS GGLVLSTTEI 701: EKLRLKQEEE DRMQRVLAKR QIDDFEHNWL NKFEEHMEAV ELLNERLIEN EDEVKILRET LSESKNIETS EVAAAMEETA TEET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)