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AT1G55110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : indeterminate(ID)-domain 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
indeterminate(ID)-domain 7 (IDD7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 11 (TAIR:AT3G13810.1); Has 54650 Blast hits to 21530 proteins in 476 species: Archae - 0; Bacteria - 0; Metazoa - 51826; Fungi - 384; Plants - 807; Viruses - 2; Other Eukaryotes - 1631 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AC073944EMBL:AK227194
EMBL:AY090998EMBL:AY150421EMBL:CP002684EnsemblPlants:AT1G55110
EnsemblPlants:AT1G55110.1entrez:841954Gene3D:3.30.160.60GeneID:841954
Genevisible:Q8H1F5GO:GO:0003677GO:GO:0003700GO:GO:0006351
GO:GO:0006355GO:GO:0046872Gramene:AT1G55110.1hmmpanther:PTHR10593
hmmpanther:PTHR10593:SF24HOGENOM:HOG000237608InParanoid:Q8H1F5InterPro:IPR007087
InterPro:IPR013087InterPro:IPR015880InterPro:IPR022755iPTMnet:Q8H1F5
KEGG:ath:AT1G55110OMA:DYYMMNHPaxDb:Q8H1F5Pfam:PF12171
Pfam:Q8H1F5Pfscan:PS50157PhylomeDB:Q8H1F5PIR:F96592
PRIDE:Q8H1F5PRO:PR:Q8H1F5PROSITE:PS00028PROSITE:PS50157
ProteinModelPortal:Q8H1F5Proteomes:UP000006548RefSeq:NP_175907.2scanprosite:PS00028
SMART:SM00355SMR:Q8H1F5STRING:3702.AT1G55110.1SUPFAM:SSF57667
TAIR:AT1G55110tair10-symbols:AtIDD7tair10-symbols:IDD7UniGene:At.37112
UniProt:Q8H1F5
Coordinates (TAIR10) chr1:-:20560406..20562625
Molecular Weight (calculated) 50905.50 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.92
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)