AT3G54400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G07030.1); Has 3653 Blast hits to 3640 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 1052; Fungi - 421; Plants - 1910; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20140291..20142599 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45477.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.30 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSHLLILLI SLLILKSESI NCNEKSHSSD LRVFHINSLC SPFKTSVSWA DTLLQDKARF LYLSSLAGVR KSSVPIASGR AIVQSPTYIV RANIGTPAQP 101: MLVALDTSND AAWIPCSGCV GCSSSVLFDP SKSSSSRTLQ CEAPQCKQAP NPSCTVSKSC GFNMTYGGST IEAYLTQDTL TLASDVIPNY TFGCINKASG 201: TSLPAQGLMG LGRGPLSLIS QSQNLYQSTF SYCLPNSKSS NFSGSLRLGP KNQPIRIKTT PLLKNPRRSS LYYVNLVGIR VGNKIVDIPT SALAFDPATG 301: AGTIFDSGTV YTRLVEPAYV AVRNEFRRRV KNANATSLGG FDTCYSGSVV FPSVTFMFAG MNVTLPPDNL LIHSSAGNLS CLAMAAAPVN VNSVLNVIAS 401: MQQQNHRVLI DVPNSRLGIS RETCT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)