AT4G22010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 4 (sks4); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 5 (TAIR:AT1G76160.1); Has 5236 Blast hits to 5188 proteins in 961 species: Archae - 4; Bacteria - 1473; Metazoa - 274; Fungi - 2031; Plants - 1319; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11663429..11666463 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60459.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT 101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN 201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS 301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS 401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ 501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)