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AT1G78100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22220.1); Has 149 Blast hits to 148 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29365eggNOG:ENOG410II98eggNOG:ENOG4111CQEEMBL:AC012680
EMBL:AY054568EMBL:AY081694EMBL:CP002684EnsemblPlants:AT1G78100
EnsemblPlants:AT1G78100.1entrez:844146GeneID:844146Genevisible:Q9C9S2
GO:GO:0005634GO:GO:0009736GO:GO:0010540GO:GO:0010541
GO:GO:0016567Gramene:AT1G78100.1hmmpanther:PTHR31215hmmpanther:PTHR31215:SF6
HOGENOM:HOG000238387InParanoid:Q9C9S2IntAct:Q9C9S2InterPro:IPR001810
KEGG:ath:AT1G78100OMA:RRNVLEMPaxDb:Q9C9S2Pfam:Q9C9S2
PhylomeDB:Q9C9S2PIR:B96810PRIDE:Q9C9S2PRO:PR:Q9C9S2
ProteinModelPortal:Q9C9S2Proteomes:UP000006548RefSeq:NP_565169.1STRING:3702.AT1G78100.1
SUPFAM:SSF81383TAIR:AT1G78100UniGene:At.22971UniGene:At.73989
UniPathway:UPA00143UniProt:Q9C9S2
Coordinates (TAIR10) chr1:+:29387907..29388911
Molecular Weight (calculated) 36554.90 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.08
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)