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AT4G17350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT5G47440.1); Has 205 Blast hits to 188 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 199; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVM9eggNOG:ENOG410YCZ5EMBL:BT015941EMBL:BT025551
EMBL:CP002687EnsemblPlants:AT4G17350EnsemblPlants:AT4G17350.1entrez:827447
GeneID:827447Gramene:AT4G17350.1hmmpanther:PTHR31351hmmpanther:PTHR31351:SF2
InterPro:IPR001849InterPro:IPR008546InterPro:IPR013666KEGG:ath:AT4G17350
OMA:ELMQCARPfam:PF05703Pfam:PF08458PhylomeDB:Q5U1F1
Proteomes:UP000006548RefSeq:NP_193466.2SMART:SM00233STRING:3702.AT4G17350.1
TAIR:AT4G17350UniGene:At.33006UniGene:At.48870UniProt:Q5U1F1
Coordinates (TAIR10) chr4:+:9701582..9703358
Molecular Weight (calculated) 44530.80 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.45
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)