AT5G04980.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.909 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT5G65090.1); Has 2295 Blast hits to 2058 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 744; Fungi - 561; Plants - 687; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:1468575..1470482 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49318.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPTQQIQSLR VFVATWNVGG KSPHSGLNLD ALLHVHSEFD VYVLGFQEIV PLNAGNVLVL GDNEPAAKWL AMINQSLNKS SSSSGGRLSP KTPSFGAGSM 101: FFAKPSLKKI SESFRTECRR KLKICNCSTF SEDIVRKYGR ESCFRCPEGL VNQSGVLSDD EEDEDDDDDD EDEDEGGGKV ASLVSNQMTM KYGLVASKQM 201: VGIFLTVWMR KELIQHVSHL RISSVTRGIM GCLGNKGCIA VSLQLYKTSF CFICSHLASG EREGDERRRN LDVIEILKNT SFPRICRTSF TRVPDRITKH 301: DRVIWLGDLN YRIALSYSET KTLLDKNAWD TLLNKDQLKI ERDAGRVFKG WHEGKIFFAP TYKYSYNSDA YAGDTSKEKK NKRRTPAWCD RILWHGDGIR 401: QLSYVRGESR FSDHRPVCSV FVVDVEVCEG KTGTRRQ |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)