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AT5G04980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.909
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT5G65090.1); Has 2295 Blast hits to 2058 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 744; Fungi - 561; Plants - 687; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04980-MONOMERBioCyc:ARA:GQT-792-MONOMEREC:3.1.3.-eggNOG:COG5411
eggNOG:KOG0565EMBL:AB005245EMBL:CP002688EnsemblPlants:AT5G04980
EnsemblPlants:AT5G04980.1EnsemblPlants:AT5G04980.2entrez:830380ExpressionAtlas:A8MR21
Gene3D:3.60.10.10GeneID:830380Genevisible:A8MR21GO:GO:0016787
GO:GO:0046856hmmpanther:PTHR11200hmmpanther:PTHR11200:SF112HOGENOM:HOG000241161
InParanoid:A8MR21InterPro:IPR000300InterPro:IPR005135iPTMnet:A8MR21
KEGG:ath:AT5G04980OMA:KWLAMINPaxDb:A8MR21Pfam:PF03372
PhylomeDB:A8MR21PRIDE:A8MR21PRO:PR:A8MR21ProteinModelPortal:A8MR21
Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-1855183Reactome:R-ATH-1855204
Reactome:R-ATH-194840RefSeq:NP_001078529.1RefSeq:NP_196117.2SMART:SM00128
SMR:A8MR21STRING:3702.AT5G04980.2SUPFAM:SSF56219TAIR:AT5G04980
UniGene:At.33049UniProt:F4JXT0
Coordinates (TAIR10) chr5:-:1468575..1470482
Molecular Weight (calculated) 49318.70 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.45
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTQQIQSLR VFVATWNVGG KSPHSGLNLD ALLHVHSEFD VYVLGFQEIV PLNAGNVLVL GDNEPAAKWL AMINQSLNKS SSSSGGRLSP KTPSFGAGSM
101: FFAKPSLKKI SESFRTECRR KLKICNCSTF SEDIVRKYGR ESCFRCPEGL VNQSGVLSDD EEDEDDDDDD EDEDEGGGKV ASLVSNQMTM KYGLVASKQM
201: VGIFLTVWMR KELIQHVSHL RISSVTRGIM GCLGNKGCIA VSLQLYKTSF CFICSHLASG EREGDERRRN LDVIEILKNT SFPRICRTSF TRVPDRITKH
301: DRVIWLGDLN YRIALSYSET KTLLDKNAWD TLLNKDQLKI ERDAGRVFKG WHEGKIFFAP TYKYSYNSDA YAGDTSKEKK NKRRTPAWCD RILWHGDGIR
401: QLSYVRGESR FSDHRPVCSV FVVDVEVCEG KTGTRRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)