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AT5G57190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17449644 (2007): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphatidylserine decarboxylase 2
Curator
Summary (TAIR10)
Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.
Computational
Description (TAIR10)
phosphatidylserine decarboxylase 2 (PSD2); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Calcium-binding EF-hand (InterPro:IPR002048), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 3 (TAIR:AT4G25970.1); Has 3739 Blast hits to 3658 proteins in 1335 species: Archae - 3; Bacteria - 2361; Metazoa - 260; Fungi - 489; Plants - 195; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57190-MONOMERBioCyc:MetaCyc:AT5G57190-MONOMEREC:4.1.1.65eggNOG:COG0688
eggNOG:KOG2419EMBL:AB023042EMBL:CP002688EMBL:EF203902
EnsemblPlants:AT5G57190EnsemblPlants:AT5G57190.1entrez:835825Gene3D:1.10.238.10
Gene3D:2.60.40.150GeneID:835825Genevisible:F4KAK5GO:GO:0004609
GO:GO:0005509GO:GO:0006646GO:GO:0009705GO:GO:0016540
Gramene:AT5G57190.1gramene_pathway:4.1.1.65gramene_pathway:PWY-5669HAMAP:MF_00663
hmmpanther:PTHR10067hmmpanther:PTHR10067:SF2HOGENOM:HOG000254780InParanoid:F4KAK5
InterPro:IPR000008InterPro:IPR002048InterPro:IPR003817InterPro:IPR011992
InterPro:IPR018247InterPro:IPR033177iPTMnet:F4KAK5KEGG:00564+4.1.1.65
KEGG:ath:AT5G57190KO:K01613OMA:ANDIPKFPANTHER:PTHR10067
PaxDb:F4KAK5Pfam:F4KAK5Pfam:PF00168Pfam:PF02666
Pfam:PF13499Pfam:PF13833Pfscan:PS50222PRIDE:F4KAK5
PRO:PR:F4KAK5PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:F4KAK5
Proteomes:UP000006548RefSeq:NP_200529.4scanprosite:PS00018SMART:SM00054
SMR:F4KAK5STRING:3702.AT5G57190.1SUPFAM:SSF47473SUPFAM:SSF49562
TAIR:AT5G57190tair10-symbols:PSD2TIGRfam:TIGR00163TIGRFAMs:TIGR00163
UniGene:At.55599UniPathway:UPA00558UniProt:F4KAK5
Coordinates (TAIR10) chr5:-:23171531..23175364
Molecular Weight (calculated) 71003.60 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.14
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNGNSREAK ESRRSRLRHK LQKFRIHRRH LRSSRNSAGM VIQRTVSAED FSGIALLTLI GAEMKFKDKW LACVSFGEQT FRTEISDTTQ KPIWNSEKKL
101: LLEKNGPSLA RVSVFETNRV ARNKIIGYCE LDIFDFVVQE PESTCKSFNL LDPTSSNVVG SIFLSCAIED PVETERRFAK RILSIVDYNE DGQLSFSEFS
201: DLIKAFGNLV AANKKEELFK AADLNGDGVV TIDELAALLA LQQEQEPIIN NCPVCGEALQ VSDKLNAMIH MTLCFDEGTG NQVMTGGFLT DRQASYGWMF
301: KLSEWTHLST YDVGLNTGSS ASYIVVIDRK SKRLVEELID SKIVLSMRAI YQSKIGLRLM DQGAKEILQR LSEKQGKKMS SVESAQKIPR FLEFFKDQIN
401: MAEVKYPLQH FKTFNEFFIR ELKPGARPIA CMNRNDVAVC AADCRLMAFQ SVEDSTRFWI KGKKFSIRGL LGKNVNPNAF LDGSLVIFRL APQDYHRFHV
501: PVSGVIEQFV DVSGSLYTVN PIAVNSKYCN VFTENKRTVA IISTAEFGKV AFVAIGATMV GSINFVRKEG EHVKKGDELG YFSFGGSTVI CVFEKDAIGI
601: DNDLLVNSGR SLETLVSVGM QLGVSTRTFA RSTLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)