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AT5G48150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.
Computational
Description (TAIR10)
phytochrome a signal transduction 1 (PAT1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPGZeggNOG:ENOG4111JS8EMBL:AK317252EMBL:AK317747
EnsemblPlants:AT5G48150EnsemblPlants:AT5G48150.1EnsemblPlants:AT5G48150.2entrez:834867
ExpressionAtlas:B9DGR4GeneID:834867GO:GO:0006351GO:GO:0006355
Gramene:AT5G48150.1Gramene:AT5G48150.2hmmpanther:PTHR31636hmmpanther:PTHR31636:SF38
InterPro:IPR005202KEGG:ath:AT5G48150OMA:FMETMNYPfam:PF03514
Pfam:Q9LDL7Pfscan:PS50985PhylomeDB:B9DGR4PROSITE:PS50985
RefSeq:NP_199626.1RefSeq:NP_974903.1STRING:3702.AT5G48150.1TAIR:AT5G48150
tair10-symbols:PAT1UniGene:At.7076UniProt:B9DGR4UniProt:Q9LDL7
Coordinates (TAIR10) chr5:-:19522497..19524053
Molecular Weight (calculated) 55293.20 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.29
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)