AT5G63560.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.906 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G48720.1); Has 2881 Blast hits to 2866 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 171; Plants - 2704; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:25449517..25451234 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47115.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSFELIVT RKEPVLVSPA SETPKGLHYL SNLDQNIAII VKTFYYFKSN SRSNEESYEV IKKSLSEVLV HYYPAAGRLT ISPEGKIAVD CTGEGVVVVE 101: AEANCGIEKI KKAISEIDQP ETLEKLVYDV PGARNILEIP PVVVQVTNFK CGGFVLGLGM NHNMFDGIAA MEFLNSWAET ARGLPLSVPP FLDRTLLRPR 201: TPPKIEFPHN EFEDLEDISG TGKLYSDEKL VYKSFLFGPE KLERLKIMAE TRSTTFQTLT GFLWRARCQA LGLKPDQRIK LLFAADGRSR FVPELPKGYS 301: GNGIVFTYCV TTAGEVTLNP LSHSVCLVKR AVEMVNDGFM RSAIDYFEVT RARPSLTATL LITSWAKLSF HTKDFGWGEP VVSGPVGLPE KEVILFLPCG 401: SDTKSINVLL GLPGSAMKVF QGIMDI |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)