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AT3G44540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.755
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fatty acid reductase 4
Curator
Summary (TAIR10)
Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana. Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.
Computational
Description (TAIR10)
fatty acid reductase 4 (FAR4); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Male sterility (InterPro:IPR004262), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 1 (TAIR:AT5G22500.1); Has 1944 Blast hits to 1910 proteins in 300 species: Archae - 2; Bacteria - 305; Metazoa - 993; Fungi - 183; Plants - 285; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G44540-MONOMERBioCyc:ARA:GQT-2311-MONOMERBRENDA:1.2.1.84BRENDA:1.2.1.B25
EC:1.2.1.n2eggNOG:ENOG410XS7ReggNOG:KOG1221EMBL:AK227396
EMBL:AL353818EMBL:BT033118EMBL:CP002686EnsemblPlants:AT3G44540
EnsemblPlants:AT3G44540.1entrez:823579Gene3D:3.40.50.720GeneID:823579
Genevisible:Q9LXN3GO:GO:0006629GO:GO:0009611GO:GO:0009651
GO:GO:0010345GO:GO:0035336GO:GO:0043231GO:GO:0050062
GO:GO:0080019gramene_pathway:1.2.1.-gramene_pathway:PWY-282hmmpanther:PTHR11011
hmmpanther:PTHR11011:SF25HOGENOM:HOG000242967InParanoid:Q9LXN3InterPro:IPR013120
InterPro:IPR016040InterPro:IPR026055KEGG:ath:AT3G44540KO:K13356
ncoils:CoilOMA:YMTLRESPANTHER:PTHR11011PaxDb:Q9LXN3
Pfam:PF03015Pfam:PF07993Pfam:Q9LXN3PhylomeDB:Q9LXN3
PIR:T48934PRIDE:Q9LXN3PRO:PR:Q9LXN3ProteinModelPortal:Q9LXN3
Proteomes:UP000006548Reactome:R-ATH-75896RefSeq:NP_001030809.1RefSeq:NP_190040.3
SMR:Q9LXN3STRING:3702.AT3G44540.1SUPFAM:SSF51735TAIR:AT3G44540
tair10-symbols:FAR4UniGene:At.43394UniProt:Q9LXN3
Coordinates (TAIR10) chr3:+:16124079..16127769
Molecular Weight (calculated) 56221.10 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.09
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNCIQFLH DKTILVTGVP GFLAKVFVEK ILRIQPKVKK LFLLLRAADN ESAMQRFHSE VLEKDLFRVL KNALGDENLK AFITEKVVPI PGDISVDNLG
101: VKGSDLLQHM WNEIDIIVNV AATTNFDERY DVGLSVNTFG PLNVLNFAKK CVKGQLLLHV STAYVRGEKS GLLHEKTFHM GETLNGHRKL VIETEMELMK
201: QKLKELQKQN CSEEEISQSM KDLGMSRAKL HGWPNTYVFT KSMGEMLLGN YRENLPIVII RPTMITSTFS EPFPGWIEGL RTIDSVIVAY GKGRLKCFLA
301: DPNSVLDLIP VDMVANAMVT AAAIHAGKLG SQTVYHVGSS CKNPITFEQI HDLAASYFTK NPLVRRDGSS ILVSKGTILS TMAQFSFYMT LRYKLPLQML
401: RLIYVIYPWW NGNKYKDIDR KIKLAMRLVD LYRPYVLFKG IFDDTNTEKL RLKRKEINKE MYGLFEFDPK SIDWEDYMTT IHIPGLITYV LKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)