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AT2G38390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38380.1); Has 4338 Blast hits to 4309 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 52; Plants - 4237; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38390-MONOMEREC:1.11.1.7eggNOG:ENOG410JT8VeggNOG:ENOG411082W
EMBL:AC004683EMBL:AF452385EMBL:AY099555EMBL:BT001238
EMBL:CP002685EnsemblPlants:AT2G38390EnsemblPlants:AT2G38390.1entrez:818420
GeneID:818420Genevisible:O80912GO:GO:0004601GO:GO:0005576
GO:GO:0005773GO:GO:0006979GO:GO:0009651GO:GO:0020037
GO:GO:0042744GO:GO:0046872Gramene:AT2G38390.1hmmpanther:PTHR31388
hmmpanther:PTHR31388:SF22HOGENOM:HOG000237557InParanoid:O80912IntAct:O80912
InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793
InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT2G38390KO:K00430
OMA:QYSSNTFPaxDb:O80912PeroxiBase:116Pfam:O80912
Pfam:PF00141Pfscan:PS50873PhylomeDB:O80912PIR:T02506
PRIDE:O80912PRINTS:PR00458PRINTS:PR00461PRO:PR:O80912
PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:O80912
Proteomes:UP000006548RefSeq:NP_181373.1scanprosite:PS00435scanprosite:PS00436
SMR:O80912STRING:3702.AT2G38390.1SUPFAM:SSF48113TAIR:AT2G38390
UniGene:At.28466UniProt:O80912
Coordinates (TAIR10) chr2:+:16079726..16081381
Molecular Weight (calculated) 38102.60 Da
IEP (calculated) 8.08
GRAVY (calculated) 0.00
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFSSSLSCS AMGALIVGCL LLQASNSNAQ LRPDFYFRTC PPIFNIIGDT IVNELRTDPR IAASLLRLHF HDCFVRGCDA SILLDNSTSF RTEKDAAPNK
101: NSVRGFDVID RMKAAIERAC PRTVSCADII TIASQISVLL SGGPWWPVPL GRRDSVEAFF ALANTALPSP FSTLTQLKTA FADVGLNRPS DLVALSGGHT
201: FGKAQCQFVT PRLYNFNGTN RPDPSLNPTY LVELRRLCPQ NGNGTVLVNF DSVTPTTFDR QYYTNLLNGK GLIQSDQVLF STPGADTIPL VNQYSSNTFV
301: FFGAFVDAMI RMGNLKPLTG TQGEIRQNCR VVNPRIRVVE NDDGVVSSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)