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AT2G38380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to zinc ion, response to salt stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38390.1); Has 4386 Blast hits to 4361 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 86; Plants - 4250; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38380-MONOMEREC:1.11.1.7eggNOG:ENOG410JT8VeggNOG:ENOG411082W
EMBL:AC004683EMBL:AF452388EMBL:AY035033EMBL:AY059106
EMBL:CP002685EMBL:M58381EnsemblPlants:AT2G38380EnsemblPlants:AT2G38380.1
entrez:818419ExpressionAtlas:P24102GeneID:818419Genevisible:P24102
GO:GO:0004601GO:GO:0005576GO:GO:0005773GO:GO:0006979
GO:GO:0009505GO:GO:0009651GO:GO:0010043GO:GO:0020037
GO:GO:0042744GO:GO:0046872Gramene:AT2G38380.1hmmpanther:PTHR31388
hmmpanther:PTHR31388:SF22HOGENOM:HOG000237557InParanoid:P24102InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
KEGG:00940+1.11.1.7KEGG:ath:AT2G38380KO:K00430OMA:FAEAMIR
PaxDb:P24102PeroxiBase:115Pfam:P24102Pfam:PF00141
Pfscan:PS50873PhylomeDB:P24102PIR:JU0458PIR:T02507
PRIDE:P24102PRINTS:PR00458PRINTS:PR00461PRO:PR:P24102
PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:P24102
Proteomes:UP000006548RefSeq:NP_181372.1scanprosite:PS00435scanprosite:PS00436
SMR:P24102STRING:3702.AT2G38380.1SUPFAM:SSF48113TAIR:AT2G38380
UniGene:At.312UniProt:P24102UniProt:Q0WLG9
Coordinates (TAIR10) chr2:+:16076443..16078314
Molecular Weight (calculated) 38110.40 Da
IEP (calculated) 5.76
GRAVY (calculated) 0.04
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFSPSFSCS AIGALILGCL LLQASNSNAQ LRPDFYFGTC PFVFDIIGNI IVDELQTDPR IAASLLRLHF HDCFVRGCDA SILLDNSTSF RTEKDAAPNA
101: NSARGFNVID RMKVALERAC PGRVSCADIL TIASQISVLL SGGPWWPVPL GRRDSVEAFF ALANTALPSP FFNLTQLKTA FADVGLNRTS DLVALSGGHT
201: FGRAQCQFVT PRLYNFNGTN SPDPSLNPTY LVELRRLCPQ NGNGTVLVNF DVVTPDAFDS QYYTNLRNGK GLIQSDQELF STPGADTIPL VNQYSSDMSV
301: FFRAFIDAMI RMGNLRPLTG TQGEIRQNCR VVNPRIRVVE NDDGVVSSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)