AT1G30730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30720.1); Has 4813 Blast hits to 4783 proteins in 792 species: Archae - 53; Bacteria - 2083; Metazoa - 8; Fungi - 1639; Plants - 818; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10900854..10902434 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58916.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.58 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKLLIICML LISVLVATSQ SQTDPETFLR CLVREGSNPQ VFISDVTYIP SNSSFTTVLR RRIPNLRFDK PTTPKPIAII TPTTWSHISP VLACARLFPV 101: QVRIRSGGHD FEGLSYTSTA PFFLIDLLNF KSVDVNLTEG TAWVDTGATL GELYYKIAEK SNVLGFPAGL CTTLGVGGHI SGGGYGTMMR KYGLSVDNVV 201: GSRIIDSNGN TYFDRMSMGE ELFWAVRGGG AASFGIVMGY KIRLVPVPEK VTVFSVGKTV GEGAVDLIMK WQNFSHSTDR NLFVKLTLTL VNGAKPGEKK 301: VLATFIGMNL GGFDKTLNVM NRDFPELKLK KTDCTEMRWI DSVLFWAGYP VGTPTSVLLN PTVTKKLFMK RKSDYVKRPV SRTGLGLILK KLVELEKVEM 401: NWNPYGGRMG EIPSSRTPFP HRGGNLFNIE YIIDWSEAGD NVEKKYLALA NEFYRFMTPY VSSNPREAFL NYRDIDIGSS GNSTYEEGKI YGAKYFKDNF 501: ERLVDIKTKF DEINFWRNEQ SIPVRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)