AT1G30720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30730.1); Has 3969 Blast hits to 3939 proteins in 594 species: Archae - 30; Bacteria - 1573; Metazoa - 1; Fungi - 1535; Plants - 718; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10898197..10899780 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58881.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKLLVISLL LLISTSVTTS QSVTDPIAFL RCLDRQPTDP TSPNSAVAYI PTNSSFTTVL RSRIPNLRFD KPTTPKPISV VAAATWTHIQ AAVGCARELS 101: LQVRIRSGGH DFEGLSYTST VPFFVLDMFG FKTVDVNLTE RTAWVDSGAT LGELYYRISE KSNVLGFPAG LSTTLGVGGH FSGGGYGNLM RKYGLSVDNV 201: FGSGIVDSNG NIFTDRVSMG EDRFWAIRGG GAASYGVVLG YKIQLVPVPE KVTVFKVGKT VGEGAVDLIM KWQSFAHSTD RNLFVRLTLT LVNGTKPGEN 301: TVLATFIGMY LGRSDKLLTV MNRDFPELKL KKTDCTEMRW IDSVLFWDDY PVGTPTSVLL NPLVAKKLFM KRKSDYVKRL ISRTDLGLIL KKLVEVEKVK 401: MNWNPYGGRM GEIPSSRTPF PHRAGNLFNI EYIIDWSEAG DNVEKKYLAL ANEFYRFMTP YVSSNPREAF LNYRDLDIGS SVKSTYQEGK IYGAKYFKEN 501: FERLVDIKTT IDAENFWKNE QSIPVRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)