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AT1G30700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30710.1); Has 4734 Blast hits to 4686 proteins in 819 species: Archae - 47; Bacteria - 2248; Metazoa - 0; Fungi - 1602; Plants - 666; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30700-MONOMEReggNOG:COG0277eggNOG:ENOG410IGF2EMBL:AC007060
EMBL:AF419607EMBL:AY140079EMBL:BT010384EMBL:CP002684
EnsemblPlants:AT1G30700EnsemblPlants:AT1G30700.1entrez:839950Gene3D:3.30.465.10
GeneID:839950GO:GO:0016614GO:GO:0050660Gramene:AT1G30700.1
hmmpanther:PTHR32448hmmpanther:PTHR32448:SF25HOGENOM:HOG000238933InterPro:IPR006094
InterPro:IPR012951InterPro:IPR016166InterPro:IPR016169KEGG:ath:AT1G30700
OMA:AYPAGICPfam:PF01565Pfam:PF08031Pfscan:PS51387
PhylomeDB:Q9SA85PIR:E86432PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_174357.1SMR:Q9SA85STRING:3702.AT1G30700.1SUPFAM:SSF56176
TAIR:AT1G30700UniGene:At.27381UniProt:Q9SA85
Coordinates (TAIR10) chr1:+:10892623..10894437
Molecular Weight (calculated) 59517.50 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.20
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYALILVLF FVVFIWQSSS SSANSETFTQ CLTSNSDPKH PISPAIFFSG NGSYSSVLQA NIRNLRFNTT STPKPFLIIA ATHESHVQAA ITCGKRHNLQ
101: MKIRSGGHDY DGLSYVTYSG KPFFVLDMFN LRSVDVDVAS KTAWVQTGAI LGEVYYYIWE KSKTLAYPAG ICPTVGVGGH ISGGGYGNMM RKYGLTVDNT
201: IDARMVDVNG KILDRKLMGE DLYWAINGGG GGSYGVVLAY KINLVEVPEN VTVFRISRTL EQNATDIIHR WQQVAPKLPD ELFIRTVIDV VNGTVSSQKT
301: VRTTFIAMFL GDTTTLLSIL NRRFPELGLV RSDCTETSWI QSVLFWTNIQ VGSSETLLLQ RNQPVNYLKR KSDYVREPIS RTGLESIWKK MIELEIPTMA
401: FNPYGGEMGR ISSTVTPFPY RAGNLWKIQY GANWRDETLT DRYMELTRKL YQFMTPFVSK NPRQSFFNYR DVDLGINSHN GKISSYVEGK RYGKKYFAGN
501: FERLVKIKTR VDSGNFFRNE QSIPVLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)