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AT4G02330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPMEPCRB; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G02810.1); Has 2755 Blast hits to 2700 proteins in 321 species: Archae - 8; Bacteria - 597; Metazoa - 1; Fungi - 199; Plants - 1923; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02330-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IFP7
EMBL:AF033206EMBL:AF069298EMBL:AL161494EMBL:AY080836
EMBL:AY150433EMBL:CP002687EnsemblPlants:AT4G02330EnsemblPlants:AT4G02330.1
entrez:828064Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:828064
Genevisible:Q8RXK7GO:GO:0005576GO:GO:0005618GO:GO:0009409
GO:GO:0009620GO:GO:0009741GO:GO:0030599GO:GO:0042545
GO:GO:0043086GO:GO:0045330GO:GO:0045490GO:GO:0046910
GO:GO:0071944Gramene:AT4G02330.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31707hmmpanther:PTHR31707:SF38HOGENOM:HOG000217409InParanoid:Q8RXK7
InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334
InterPro:IPR033131KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT4G02330
KO:K01051OMA:PKNTHSHPaxDb:Q8RXK7Pfam:PF01095
Pfam:PF04043Pfam:Q8RXK7PhylomeDB:Q8RXK7PIR:T01317
PRIDE:Q8RXK7PRO:PR:Q8RXK7PROSITE:PS00503ProteinModelPortal:Q8RXK7
Proteomes:UP000006548RefSeq:NP_567227.1scanprosite:PS00503SMART:SM00856
SMR:Q8RXK7STRING:3702.AT4G02330.1SUPFAM:SSF101148SUPFAM:SSF51126
TAIR:AT4G02330tair10-symbols:ATPMEPCRBTIGRfam:TIGR01614TIGRFAMs:TIGR01614
UniGene:At.43016UniPathway:UPA00545UniProt:Q8RXK7
Coordinates (TAIR10) chr4:+:1032479..1034928
Molecular Weight (calculated) 63947.30 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.25
Length 573 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLKLFLVT LFLSLQTLFI ASQTLLPSNS SSTICKTTPD PKFCKSVFPQ TSQGDVREYG RFSLRKSLTQ SRKFTRTIDR YLKRNNALLS QSAVGALQDC
101: RYLASLTTDY LITSFETVNI TTSSKTLSFS KADEIQTLLS AALTNEQTCL DGINTAASSS WTIRNGVALP LINDTKLFSV SLALFTKGWV PKKKKQVASY
201: SWAHPKNTHS HTKPFRHFRN GALPLKMTEH TRAVYESLSR RKLADDDNDV NTVLVSDIVT VNQNGTGNFT TITEAVNSAP NKTDGTAGYF VIYVTSGVYE
301: ENVVIAKNKR YLMMIGDGIN RTVVTGNRNV VDGWTTFNSA TFAVTSPNFV AVNMTFRNTA GPEKHQAVAM RSSADLSIFY SCSFEAYQDT LYTHSLRQFY
401: RECDIYGTVD FIFGNAAVVF QDCNLYPRQP MQNQFNAITA QGRTDPNQNT GISIHNCTIK PADDLVSSNY TVKTYLGRPW KEYSRTVFMQ SYIDEVVEPV
501: GWREWNGDFA LSTLYYAEYN NTGSGSSTTD RVVWPGYHVI NSTDANNFTV ENFLLGDGWM VQSGVPYISG LLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)