AT4G39830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cupredoxin superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cupredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117), L-ascorbate oxidase, plants (InterPro:IPR017760); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1); Has 10346 Blast hits to 8779 proteins in 1558 species: Archae - 67; Bacteria - 4905; Metazoa - 456; Fungi - 3230; Plants - 1293; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:18479103..18481184 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 66157.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 582 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMRPKRSSDT VHVFNLMVLC FIALFFSSVL CQGKIRRFKW EVKYEFKSPD CFEKLVITIN GKFPGPTIKA QQGDTIVVEL KNSFMTENVA VHWHGIRQIG 101: TPWFDGVEGV TQCPILPGEV FIYQFVVDRP GTYMYHSHYG MQRESGLIGM IQVSPPATEP EPFTYDYDRN FLLTDWYHKS MSEKATGLAS IPFKWVGEPQ 201: SLMIQGRGRF NCSNNLTTPP SLVSGVCNVS NADCSRFILT VIPGKTYRLR IGSLTALSAL SFQIEGHNLT VVEADGHYVE PFTVKNLFVY SGETYSVLLK 301: ADQNPRRNYW ITSSIVSRPA TTPPATAVLN YYPNHPRRRP PTSESSNIVP EWNDTRSRLA QSLAIKARRG FIHALPENSD KVIVLLNTQN EVNGYRRWSV 401: NNVSYHHPKT PYLIALKQNL TNAFDWRFTA PENYDSRNYD IFAKPLNANA TTSDGIYRLR FNSTVDVILQ NANTMNANNS ETHPWHLHGH DFWVLGYGEG 501: KFNESEDPKR YNRVDPIKKN TVAVQPFGWT ALRFRADNPG VWSFHCHIES HFFMGMGIVF ESGIDKVSSL PSSIMGCGQT KR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)