AT3G10720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1); Has 2403 Blast hits to 2363 proteins in 309 species: Archae - 6; Bacteria - 557; Metazoa - 1; Fungi - 195; Plants - 1619; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3354639..3355750 | ||||||||||||
| Molecular Weight (calculated) | 29518.90 Da | ||||||||||||
| IEP (calculated) | 6.50 | ||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||
| Length | 263 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLMGDGINKT IITGNHNVVD GWTTYNCSSF AVVGERFMAV DVTFRNTAGP EKHQAVALRN NAEGSSFYRC SFEGYQDTLY VHSLRQFYRE CDIYGTVDFI 101: FGNAAAIFQN CNIYARKPMA KQKNAITAHG RLDPNQNTGI SIINCTIKAA PDLAAEPKSA MTFLGRPWKP YSRTVFMQSY ISDIVQPVGW LEWNGTIGLD 201: TIYYGEYSNF GPGANTNQRV QWLGYNLLNL AEAMNFTVYN FTMGDTWLPQ TDIPFYGGLL SKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)