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AT1G53830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:19825673 (2009): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pectin methylesterase 2
Curator
Summary (TAIR10)
encodes a pectin methylesterase
Computational
Description (TAIR10)
pectin methylesterase 2 (PME2); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plant-type cell wall; EXPRESSED IN: sepal, flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 3 (TAIR:AT3G14310.1); Has 3028 Blast hits to 2957 proteins in 336 species: Archae - 6; Bacteria - 620; Metazoa - 1; Fungi - 201; Plants - 2174; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53830-MONOMERBioGrid:27045EC:3.1.1.11eggNOG:COG4677
eggNOG:ENOG410IF38EMBL:AC009324EMBL:AF361637EMBL:AY133609
EMBL:CP002684EMBL:U25649EnsemblPlants:AT1G53830EnsemblPlants:AT1G53830.1
entrez:841820Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:841820
Genevisible:Q42534GO:GO:0005576GO:GO:0009505GO:GO:0030599
GO:GO:0042545GO:GO:0043086GO:GO:0045330GO:GO:0045490
GO:GO:0046910Gramene:AT1G53830.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31707hmmpanther:PTHR31707:SF55HOGENOM:HOG000217409InParanoid:Q42534
InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018040InterPro:IPR033131iPTMnet:Q42534KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT1G53830KO:K01051OMA:ETDIANF
PaxDb:Q42534Pfam:PF01095Pfam:PF04043Pfam:Q42534
PhylomeDB:Q42534PIR:D96578PIR:PC4168PRIDE:Q42534
PRO:PR:Q42534PROSITE:PS00503PROSITE:PS00800ProteinModelPortal:Q42534
Proteomes:UP000006548RefSeq:NP_175786.1scanprosite:PS00503scanprosite:PS00800
SMART:SM00856SMR:Q42534STRING:3702.AT1G53830.1SUPFAM:SSF101148
SUPFAM:SSF51126TAIR:AT1G53830tair10-symbols:ATPME2tair10-symbols:PME2
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.10820
UniGene:At.66848UniPathway:UPA00545UniProt:Q42534
Coordinates (TAIR10) chr1:+:20098562..20100745
Molecular Weight (calculated) 64176.20 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.27
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPIKEFISK FSDFKNNKKL ILSSAAIALL LLASIVGIAA TTTNQNKNQK ITTLSSTSHA ILKSVCSSTL YPELCFSAVA ATGGKELTSQ KEVIEASLNL
101: TTKAVKHNYF AVKKLIAKRK GLTPREVTAL HDCLETIDET LDELHVAVED LHQYPKQKSL RKHADDLKTL ISSAITNQGT CLDGFSYDDA DRKVRKALLK
201: GQVHVEHMCS NALAMIKNMT ETDIANFELR DKSSTFTNNN NRKLKEVTGD LDSDGWPKWL SVGDRRLLQG STIKADATVA DDGSGDFTTV AAAVAAAPEK
301: SNKRFVIHIK AGVYRENVEV TKKKTNIMFL GDGRGKTIIT GSRNVVDGST TFHSATVAAV GERFLARDIT FQNTAGPSKH QAVALRVGSD FSAFYQCDMF
401: AYQDTLYVHS NRQFFVKCHI TGTVDFIFGN AAAVLQDCDI NARRPNSGQK NMVTAQGRSD PNQNTGIVIQ NCRIGGTSDL LAVKGTFPTY LGRPWKEYSR
501: TVIMQSDISD VIRPEGWHEW SGSFALDTLT YREYLNRGGG AGTANRVKWK GYKVITSDTE AQPFTAGQFI GGGGWLASTG FPFSLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)