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AT2G25810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19922653 (2009): plant-type vacuole plant-type vacuole membrane
  • PMID:14576283 (2003): endoplasmic reticulum
  • PMID:14576283 (2003): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tonoplast intrinsic protein 4;1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tonoplast intrinsic protein 4;1 (TIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, membrane, central vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10430 Blast hits to 10407 proteins in 2161 species: Archae - 84; Bacteria - 4945; Metazoa - 1471; Fungi - 406; Plants - 2499; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).
Protein Annotations
BioGrid:2475eggNOG:COG0580eggNOG:KOG0223EMBL:AC005395
EMBL:AK226190EMBL:BT012635EMBL:CP002685EnsemblPlants:AT2G25810
EnsemblPlants:AT2G25810.1entrez:817123Gene3D:1.20.1080.10GeneID:817123
Genevisible:O82316GO:GO:0006833GO:GO:0009705GO:GO:0015250
GO:GO:0015254GO:GO:0015793GO:GO:0016021GO:GO:0034220
GO:GO:0042807Gramene:AT2G25810.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF143
HOGENOM:HOG000288286InParanoid:O82316IntAct:O82316InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT2G25810KO:K09873
OMA:GMGTPVHPANTHER:PTHR19139PaxDb:O82316Pfam:O82316
Pfam:PF00230PhylomeDB:O82316PIR:A84653PRIDE:O82316
PRINTS:PR00783PRO:PR:O82316PROSITE:PS00221ProteinModelPortal:O82316
Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673Reactome:R-ATH-432040
Reactome:R-ATH-432047RefSeq:NP_180152.1scanprosite:PS00221SMR:O82316
STRING:3702.AT2G25810.1SUPFAM:SSF81338TAIR:AT2G25810tair10-symbols:TIP4;1
TIGRfam:TIGR00861TIGRFAMs:TIGR00861TMHMM:TMhelixUniGene:At.43822
UniProt:O82316
Coordinates (TAIR10) chr2:+:11012658..11013906
Molecular Weight (calculated) 26074.90 Da
IEP (calculated) 6.22
GRAVY (calculated) 0.74
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)