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AT3G29410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1); Has 1701 Blast hits to 1673 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1697; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G29410-MONOMEREC:4.2.3.-eggNOG:ENOG410IVC5eggNOG:ENOG410YBXH
EMBL:AF497488EMBL:AP001309EMBL:BX822709EMBL:CP002686
EnsemblPlants:AT3G29410EnsemblPlants:AT3G29410.1entrez:822602Gene3D:1.10.600.10
Gene3D:1.50.30.10GeneID:822602Genevisible:Q9LIA1GO:GO:0000287
GO:GO:0005737GO:GO:0010333GO:GO:0016114Gramene:AT3G29410.1
hmmpanther:PTHR31045hmmpanther:PTHR31045:SF4HOGENOM:HOG000232971InParanoid:Q9LIA1
InterPro:IPR001906InterPro:IPR005630InterPro:IPR008930InterPro:IPR008949
KEGG:ath:AT3G29410ncoils:CoilOMA:MERESYKPaxDb:Q9LIA1
Pfam:PF01397Pfam:PF03936Pfam:Q9LIA1PhylomeDB:Q9LIA1
PRIDE:Q9LIA1PRO:PR:Q9LIA1ProteinModelPortal:Q9LIA1Proteomes:UP000006548
RefSeq:NP_189587.1SMR:Q9LIA1STRING:3702.AT3G29410.1SUPFAM:SSF48239
SUPFAM:SSF48576TAIR:AT3G29410UniGene:At.36922UniPathway:UPA00213
UniProt:Q9LIA1
Coordinates (TAIR10) chr3:-:11302574..11305060
Molecular Weight (calculated) 70228.60 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.24
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MEASKCFGPR TLPIIHNVPL CLKTNFSLFP CRLLQSQSLS SKKSTKHYLF RVKAETSGDL ESTRPLTYFS PSYWGDHFLS VSIDDSEFEA LEKEIETVFK
101: PKVRDMLMSP HSSDKERIRL IHLLISLGIA YYYENEIEEI LHKAYGKLAC LISDEDDLET IAIMFEVFRL YGHKMPCDVF ERFKSEDGKF KESLVGDVRG
201: LLQLYEAAHL GAPSEDIMDE ALSFARYHLE PLAGTETSSN LFKHVENVLY RARYHSIEIL VARQYISFYD QEEDQDETLL RFSKLNFNFC QMHYVKELKI
301: VTRWWKELGI ASKLPYSIRE RNVETYLGGL GVLFEPRYSL ARIFLAKLTL IMTVVDDTCD AYATLPEVQS LHDAFHRWDL RAMEELPRYM RIIYQSVFET
401: VEDIDREMIA RGKHGRLQLT IDEIKSLMIW YLGIAKWARS DQVPSFEDYM EIGTPSSALD DFASYGFIAM DDCDQKQLKE WFYSKPKIFH ALNALFRIRN
501: DIVTFEQEMS RGEVANGVNC YMKQHGVTKE AAVEELRKME RESYKIMIEE FMTSKAMPRQ ILVRPVNIAR VMDLFYKEAD GFGHPDQKLL QLIASLFLHP
601: IPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)