AT1G05300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc transporter 5 precursor | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Fe(II) transporter isolog family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 1970 Blast hits to 1847 proteins in 292 species: Archae - 0; Bacteria - 139; Metazoa - 489; Fungi - 625; Plants - 507; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1545258..1547709 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38169.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRITQNVKLL LFFFFFISFL FIAVSAGESK CECSHEDDEA NKAGAKKYKI AAIPSVLAAG VIGVMFPLLG KFFPSLKPET TFFFVTKAFA AGVILATGFM 101: HVLPEGYEKL TSPCLKGEAW EFPFTGFIAM VAAILTLSVD SFATSYFHKA HFKTSKRIGD GEEQDAGGGG GGGDELGLHV HAHGHTHGIV GVESGESQVQ 201: LHRTRVVAQV LEVGIIVHSV VIGISLGASQ SPDTAKALFA ALMFHQCFEG LGLGGCIAQG NFNCMSITIM SIFFSVTTPV GIAVGMAISS SYDDSSPTAL 301: IVQGVLNAAS AGILIYMSLV DFLAADFMHP KMQSNTRLQI MAHISLLVGA GVMSLLAKWA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)