AT5G46050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.681 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : peptide transporter 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18675062..18679071 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65275.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 582 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVEEVGDDY TKDGTVDLQG NPVRRSIRGR WKACSFVVVY EVFERMAYYG ISSNLFIYMT TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VGDALLGRYI 101: TFVISCAIYF SGMMVLTLSV TIPGIKPPEC STTNVENCEK ASVLQLAVFF GALYTLAIGT GGTKPNISTI GADQFDVFDP KEKTQKLSFF NWWMFSIFFG 201: TLFANTVLVY VQDNVGWTLG YGLPTLGLAI SITIFLLGTP FYRHKLPTGS PFTKMARVIV ASFRKANAPM THDITSFHEL PSLEYERKGA FPIHPTPSLR 301: FLDRASLKTG TNHKWNLCTT TEVEETKQML RMLPVLFITF VPSMMLAQIN TLFVKQGTTL DRKVTGSFSI PPASLSGFVT LSMLISIVLY DRVFVKITRK 401: FTGNPRGITL LQRMGIGLIF HILIMIVASV TERYRLKVAA DHGLIHQTGV KLPLTIFALL PQFVLMGMAD SFLEVAKLEF FYDQAPESMK SLGTSYSTTS 501: LAIGNFMSSF LLSTVSEITK KRGRGWILNN LNESRLDYYY LFFAVLNLVN FVLFLVVVKF YVYRAEVTDS VDVKEVEMKE TE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)