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AT5G26340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.
Computational
Description (TAIR10)
MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17978eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AF077407
EMBL:AF250340EMBL:AJ344338EMBL:AK230023EMBL:AY045591
EMBL:AY052692EMBL:AY143909EMBL:CP002688EnsemblPlants:AT5G26340
EnsemblPlants:AT5G26340.1entrez:832703GeneID:832703Genevisible:Q94AZ2
GO:GO:0005358GO:GO:0005886GO:GO:0005887GO:GO:0009414
GO:GO:0009506GO:GO:0009651GO:GO:0009679GO:GO:0009737
GO:GO:0015145GO:GO:0015749GO:GO:0035428GO:GO:0046323
GO:GO:1904659Gramene:AT5G26340.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF70
HOGENOM:HOG000202867InParanoid:Q94AZ2InterPro:IPR003663InterPro:IPR005828
InterPro:IPR005829InterPro:IPR020846iPTMnet:Q94AZ2KEGG:ath:AT5G26340
OMA:HHIVNGKPaxDb:Q94AZ2Pfam:PF00083Pfam:Q94AZ2
Pfscan:PS50850PhylomeDB:Q94AZ2PIR:T01853PRIDE:Q94AZ2
PRINTS:PR00171PRO:PR:Q94AZ2PROSITE:PS00216PROSITE:PS50850
ProteinModelPortal:Q94AZ2Proteomes:UP000006548RefSeq:NP_198006.1scanprosite:PS00216
SMR:Q94AZ2STRING:3702.AT5G26340.1SUPFAM:SSF103473SwissPalm:Q94AZ2
TAIR:AT5G26340tair10-symbols:ATSTP13tair10-symbols:MSS1tair10-symbols:STP13
TCDB:2.A.1.1.50TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelix
UniGene:At.24074UniProt:Q94AZ2
Coordinates (TAIR10) chr5:-:9243851..9246994
Molecular Weight (calculated) 57422.70 Da
IEP (calculated) 8.98
GRAVY (calculated) 0.52
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGGGFATSA NGVEFEAKIT PIVIISCIMA ATGGLMFGYD VGVSGGVTSM PDFLEKFFPV VYRKVVAGAD KDSNYCKYDN QGLQLFTSSL YLAGLTATFF
101: ASYTTRTLGR RLTMLIAGVF FIIGVALNAG AQDLAMLIAG RILLGCGVGF ANQAVPLFLS EIAPTRIRGG LNILFQLNVT IGILFANLVN YGTAKIKGGW
201: GWRLSLGLAG IPALLLTVGA LLVTETPNSL VERGRLDEGK AVLRRIRGTD NVEPEFADLL EASRLAKEVK HPFRNLLQRR NRPQLVIAVA LQIFQQCTGI
301: NAIMFYAPVL FSTLGFGSDA SLYSAVVTGA VNVLSTLVSI YSVDKVGRRV LLLEAGVQMF FSQVVIAIIL GVKVTDTSTN LSKGFAILVV VMICTYVAAF
401: AWSWGPLGWL IPSETFPLET RSAGQSVTVC VNLLFTFIIA QAFLSMLCHF KFGIFIFFSA WVLIMSVFVM FLLPETKNIP IEEMTERVWK KHWFWARFMD
501: DHNDHEFVNG EKSNGKSNGF DPSTRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)