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AT4G34120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1 (LEJ1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT4G36910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14840eggNOG:ENOG410IY0MeggNOG:ENOG4111TWYEMBL:AF360331
EMBL:AL021961EMBL:AL161584EMBL:AY056339EMBL:CP002687
EnsemblPlants:AT4G34120EnsemblPlants:AT4G34120.1entrez:829558GeneID:829558
Genevisible:Q9C5D0GO:GO:0009507GO:GO:0009570GO:GO:0045454
Gramene:AT4G34120.1hmmpanther:PTHR11911hmmpanther:PTHR11911:SF109HOGENOM:HOG000187907
IntAct:Q9C5D0InterPro:IPR000644KEGG:ath:AT4G34120OMA:FMTRKEE
PaxDb:Q9C5D0PDB:3SL7PDB:4GQYPDBsum:3SL7
PDBsum:4GQYPfam:PF00571Pfam:Q9C5D0Pfscan:PS51371
PhylomeDB:Q9C5D0PIR:T05424PRIDE:Q9C5D0PRO:PR:Q9C5D0
PROSITE:PS51371ProteinModelPortal:Q9C5D0Proteomes:UP000006548RefSeq:NP_567952.1
SMART:SM00116SMR:Q9C5D0STRING:3702.AT4G34120.1SUPFAM:SSF54631
TAIR:AT4G34120tair10-symbols:CDCP1tair10-symbols:LEJ1UniGene:At.27243
UniGene:At.49487UniGene:At.68482UniProt:Q9C5D0
Coordinates (TAIR10) chr4:+:16341194..16342893
Molecular Weight (calculated) 25957.00 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.08
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)