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AT1G21670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 8461 Blast hits to 5060 proteins in 1257 species: Archae - 79; Bacteria - 5567; Metazoa - 37; Fungi - 70; Plants - 117; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J73ZeggNOG:ENOG4111FWTEMBL:AC007727EMBL:AY035079
EMBL:BT000981EMBL:CP002684EnsemblPlants:AT1G21670EnsemblPlants:AT1G21670.1
entrez:838769Gene3D:2.130.10.10GeneID:838769GO:GO:0005618
GO:GO:0009505Gramene:AT1G21670.1hmmpanther:PTHR32161hmmpanther:PTHR32161:SF8
HOGENOM:HOG000240011InterPro:IPR011659InterPro:IPR015943KEGG:ath:AT1G21670
OMA:NDTIATWPfam:PF07676PhylomeDB:Q9XI11PIR:H86349
ProMEX:Q9XI11Proteomes:UP000006548RefSeq:NP_564146.1SMR:Q9XI11
SUPFAM:0039879SUPFAM:SSF82171TAIR:AT1G21670UniGene:At.11463
UniProt:Q9XI11
Coordinates (TAIR10) chr1:+:7610409..7612520
Molecular Weight (calculated) 77292.80 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.28
Length 703 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLTNALFFF FLICLLSLSS ASSNKPQLSN GSTILFTTIG RPTFEFDIFT LPTSHRPPSP ADEHRLTDGK SINFNGYFAS PSTALISLLP KRTQIQPQDV
101: HLIYVTERAG TPSLNYDVVH SDNVGSRIQV PLFSGEEQQS GMNVNSMKDT PVLTNGYLVH VSTHENPGKP MASWAAVYST ELRTKSTRRL TPLGIADFSP
201: AVSPSGKWTA VASFGEKGWT WSMVEKEISS DVYVFLTQDG TQRVKVVEQG GWPRWVDDST LYFHRKSDDG WISVYRAILP KTGPVTTKSV TIQRVTPPGL
301: HAFTPATSPN NNNFIAVATR RPGSEIRHVE LFDLKKNEFV ELTRLVSPKS HHFNPFLSPD SSRVGYHSCR GDATGRKTPR NLLQSLKTTS NDLSLFRFDG
401: AFPSISPEGD RFAFVSFTGV FVVNPDGSGL RQLLPQMGFG TVWDPIRHGI VYTSSGPALA PGKSQIDILA INVDAPSPAT AVKKLTTTGE NNAFPWPSPD
501: GKRIVFRSAR SGTKNLYIMD AEKGESGGLF RLTNGNWNDT IATWSPDGNW IVFASNREFP GTLLMNIYVV HPDGTGLRKL AQNLTGLVSM HPMFSPDSKR
601: IVFTTIYAGI SAEQIGNPHF NVPSSEIFTV NLDGSGLTRL THNSVEDGPP MWFPKIKATG DVAWPKRFGP SCSIQDFKTQ NTTVKMKMNK PATMSSMCVV
701: PSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)