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AT5G50200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
TAIR : plasma membrane 17317660
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:21413151 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nitrate transmembrane transporters
Curator
Summary (TAIR10)
Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.
Computational
Description (TAIR10)
WOUND-RESPONSIVE 3 (WR3); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to nitrate, response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transporter, high affinity nitrate, Nar2 (InterPro:IPR016605); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT4G24730.4); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:20331eggNOG:ENOG410IYAKeggNOG:ENOG4111P96EMBL:AB024031
EMBL:AJ310933EMBL:AJ311926EMBL:AY085586EMBL:CP002688
EnsemblPlants:AT5G50200EnsemblPlants:AT5G50200.1EnsemblPlants:AT5G50200.2EnsemblPlants:AT5G50200.3
entrez:835085GeneID:835085Genevisible:Q9FGS5GO:GO:0005886
GO:GO:0009611GO:GO:0010167GO:GO:0015112GO:GO:0015706
GO:GO:0016021GO:GO:0042128Gramene:AT5G50200.1Gramene:AT5G50200.2
Gramene:AT5G50200.3hmmpanther:PTHR34806hmmpanther:PTHR34806:SF1HOGENOM:HOG000239218
InParanoid:Q9FGS5IntAct:Q9FGS5InterPro:IPR016605KEGG:ath:AT5G50200
OMA:ISGRHATPaxDb:Q9FGS5Pfam:PF16974Pfam:Q9FGS5
PhylomeDB:Q9FGS5PIRSF:PIRSF012939PRIDE:Q9FGS5PRO:PR:Q9FGS5
Proteomes:UP000006548RefSeq:NP_199831.1RefSeq:NP_851159.1RefSeq:NP_851160.1
STRING:3702.AT5G50200.1TAIR:AT5G50200tair10-symbols:ATNRT3.1tair10-symbols:NRT3.1
tair10-symbols:WR3TCDB:8.A.20.1.1TMHMM:TMhelixUniGene:At.21028
UniProt:Q9FGS5
Coordinates (TAIR10) chr5:+:20436612..20437535
Molecular Weight (calculated) 23404.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.13
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)