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AT3G54420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:16356755 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of carrot EP3-3 chitinase
Curator
Summary (TAIR10)
encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.
Computational
Description (TAIR10)
homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G54420-MONOMERCAZy:CBM18CAZy:GH19EC:3.2.1.14
eggNOG:COG3979eggNOG:KOG4742EMBL:AK176488EMBL:AL132971
EMBL:BT010422EMBL:CP002686EMBL:Y14590EMBL:Z26409
EnsemblPlants:AT3G54420EnsemblPlants:AT3G54420.1entrez:824608Gene3D:3.30.60.10
GeneID:824608Genevisible:Q9M2U5GO:GO:0000272GO:GO:0004568
GO:GO:0005618GO:GO:0006032GO:GO:0006952GO:GO:0008061
GO:GO:0009611GO:GO:0009617GO:GO:0010262GO:GO:0016998
Gramene:AT3G54420.1hmmpanther:PTHR22595hmmpanther:PTHR22595:SF61HOGENOM:HOG000231411
InParanoid:Q9M2U5InterPro:IPR000726InterPro:IPR001002InterPro:IPR016283
InterPro:IPR018371InterPro:IPR023346KEGG:00520+3.2.1.14KEGG:ath:AT3G54420
KO:K01183OMA:GNTSDYCPaxDb:Q9M2U5Pfam:PF00182
Pfam:PF00187Pfscan:PS50941PhylomeDB:Q9M2U5PIR:T47601
PIRSF:PIRSF001060PRIDE:Q9M2U5PRINTS:PR00451ProDom:PD000609
PROSITE:PS00026PROSITE:PS00773PROSITE:PS50941ProteinModelPortal:Q9M2U5
Proteomes:UP000006548RefSeq:NP_191010.1scanprosite:PS00026scanprosite:PS00773
SMART:SM00270SMR:Q9M2U5STRING:3702.AT3G54420.1SUPFAM:SSF53955
SUPFAM:SSF57016TAIR:AT3G54420tair10-symbols:ATCHITIVtair10-symbols:ATEP3
tair10-symbols:CHIVtair10-symbols:EP3UniGene:At.35109UniProt:Q9M2U5
Coordinates (TAIR10) chr3:+:20145935..20147034
Molecular Weight (calculated) 29437.30 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.13
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTPTISKSI SLVTILLVLQ AFSNTTKAQN CGCSSELCCS QFGFCGNTSD YCGVGCQQGP CFAPPPANGV SVAEIVTQEF FNGIISQAAS SCAGNRFYSR
101: GAFLEALDSY SRFGRVGSTD DSRREIAAFF AHVTHETGHF CYIEEIDGAS KDYCDENATQ YPCNPNKGYY GRGPIQLSWN FNYGPAGTAI GFDGLNAPET
201: VATDPVISFK TALWYWTNRV QPVISQGFGA TIRAINGALE CDGANTATVQ ARVRYYTDYC RQLGVDPGNN LTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)