AT5G60780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.569 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nitrate transporter 2.3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of High affinity nitrate transporter family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nitrate transporter 2.3 (NRT2.3); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: transmembrane transport; EXPRESSED IN: shoot apex, leaf; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: high affinity nitrate transporter 2.6 (TAIR:AT3G45060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24450839..24452756 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58233.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTHNHSNEEG SIGTSLHGVT AREQVFSFSV DASSQTVQSD DPTAKFALPV DSEHRAKVFN PLSFAKPHMR AFHLGWLSFF TCFISTFAAA PLVPIIRDNL 101: DLTKTDIGNA GVASVSGAIF SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY WTSVMFNGKI IGLVNGCAGG 201: WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG 301: IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC 401: GALFGVAPFV SRRSLGLISG LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST DGERSQEEYY YGSEWTENEK 501: QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)