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AT3G04220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21515817 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 57565 Blast hits to 26212 proteins in 923 species: Archae - 48; Bacteria - 2396; Metazoa - 5228; Fungi - 257; Plants - 46915; Viruses - 16; Other Eukaryotes - 2705 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886EMBL:CP002686EnsemblPlants:AT3G04220EnsemblPlants:AT3G04220.1
entrez:819577Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:819577GO:GO:0005524GO:GO:0006952GO:GO:0007165
GO:GO:0016021GO:GO:0043531Gramene:AT3G04220.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF20InParanoid:F4J3L8InterPro:IPR000157InterPro:IPR002182
InterPro:IPR003593InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
iPTMnet:F4J3L8KEGG:ath:AT3G04220OMA:HVENCESPaxDb:F4J3L8
Pfam:PF00931Pfam:PF01582Pfscan:PS50104PRIDE:F4J3L8
PROSITE:PS50104ProteinModelPortal:F4J3L8Proteomes:UP000006548RefSeq:NP_187072.2
SMART:SM00255SMART:SM00382SMR:F4J3L8STRING:3702.AT3G04220.1
SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT3G04220TMHMM:TMhelixUniGene:At.51214UniProt:F4J3L8
Coordinates (TAIR10) chr3:-:1109118..1112188
Molecular Weight (calculated) 98516.40 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.29
Length 867 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSFLLETV AAATGFFTLL GTILFMVYRK FKDHRENKEN DSSSSTQPSP SPPLSSLSLT RKYDVFPSFR GEDVRKDFLS HIQKEFQRQG ITPFVDNNIK
101: RGESIGPELI RAIRGSKIAI ILLSKNYASS SWCLDELVEI IKCKEEMGQT VIVIFYKVDP SLVKKLTGDF GKVFRNTCKG KERENIERWR EAFKKVATIA
201: GYDSRKWDNE SGMIEKIVSD ISEMLNHSTP SRDFDDLIGM GDHMEKMKPL LDIDSDEMKT IGIWGPPGVG KTTIARSLYN QHSDKFQLSV FMESIKTAYT
301: IPACSDDYYE KLQLQQRFLS QITNQENVQI PHLGVAQERL NDKKVLVVID DVNQSVQVDA LAKENDWLGP GSRIIITTQD RGILRAHGIE HIYEVDYPNY
401: EEALQIFCMH AFGQKSPYDG FEELAQQVTT LSGRLPLGLK VMGSYFRGMT KQEWTMALPR VRTHLDGKIE SILKLSYDAL CDVDKSLFLH LACSFHNDDT
501: ELVEQQLGKK FSDLRQGLHV LAEKSLIHMD LRLIRMHVLL AQLGREIVRK QSIHEPGQRQ FLVDATDIRE VLTDDTGSRS VIGIDFDFNT MEKELDISEK
601: AFRGMSNLQF IRIYGDLFSR HGVYYFGGRG HRVSLDYDSK LHFPRGLDYL PGKLSKLEKL WEGIQPLRNL EWLDLTCSRN LKELPDLSTA TNLQRLSIER
701: CSSLVKLPSS IGEATNLKKI NLRECLSLVE LPSSFGNLTN LQELDLRECS SLVELPTSFG NLANVESLEF YECSSLVKLP STFGNLTNLR VLGLRECSSM
801: VELPSSFGNL TNLQVLNLRK CSTLVELPSS FVNLTNLENL DLRDCSSLLP SSFGNVTYLK RLKFYKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)