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AT1G76180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30875866 (2019): plasma membrane
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:18431481 (2008): plastid
  • PMID:17317660 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dehydrin family protein
Curator
Summary (TAIR10)
Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.
Computational
Description (TAIR10)
EARLY RESPONSE TO DEHYDRATION 14 (ERD14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.2); Has 4819 Blast hits to 3364 proteins in 392 species: Archae - 4; Bacteria - 256; Metazoa - 1221; Fungi - 272; Plants - 1466; Viruses - 16; Other Eukaryotes - 1584 (source: NCBI BLink).
Protein Annotations
BioGrid:29169DisProt:DP00667eggNOG:ENOG410J2D2eggNOG:ENOG410ZBHP
EMBL:AC009978EMBL:AF324699EMBL:AF326904EMBL:AF339722
EMBL:AF428362EMBL:AK226910EMBL:AY039594EMBL:AY054151
EMBL:AY054233EMBL:AY086997EMBL:CP002684EMBL:D17715
EnsemblPlants:AT1G76180EnsemblPlants:AT1G76180.1EnsemblPlants:AT1G76180.2entrez:843950
GeneID:843950Genevisible:P42763GO:GO:0005509GO:GO:0005829
GO:GO:0005886GO:GO:0009269GO:GO:0009409GO:GO:0009507
GO:GO:0009737Gramene:AT1G76180.1Gramene:AT1G76180.2hmmpanther:PTHR33346
HOGENOM:HOG000239337InParanoid:P42763InterPro:IPR000167InterPro:IPR030513
iPTMnet:P42763KEGG:ath:AT1G76180OMA:PVEEAHPPaxDb:P42763
Pfam:P42763Pfam:PF00257PIR:F96789PRIDE:P42763
PRO:PR:P42763PROSITE:PS00315PROSITE:PS00823ProteinModelPortal:P42763
Proteomes:UP000006548RefSeq:NP_001185408.1RefSeq:NP_177745.1scanprosite:PS00315
scanprosite:PS00823STRING:3702.AT1G76180.1TAIR:AT1G76180tair10-symbols:ERD14
UniGene:At.27847UniGene:At.47606UniGene:At.73066UniProt:P42763
Coordinates (TAIR10) chr1:-:28587013..28587657
Molecular Weight (calculated) 20787.40 Da
IEP (calculated) 5.19
GRAVY (calculated) -1.26
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEIKNVPE QEVPKVATEE SSAEVTDRGL FDFLGKKKDE TKPEETPIAS EFEQKVHISE PEPEVKHESL LEKLHRSDSS SSSSSEEEGS DGEKRKKKKE
101: KKKPTTEVEV KEEEKKGFME KLKEKLPGHK KPEDGSAVAA APVVVPPPVE EAHPVEKKGI LEKIKEKLPG YHPKTTVEEE KKDKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)