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AT3G03120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor B1C
Curator
Summary (TAIR10)
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.
Computational
Description (TAIR10)
ADP-ribosylation factor B1C (ARFB1C); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1B (TAIR:AT5G17060.1); Has 12521 Blast hits to 12513 proteins in 459 species: Archae - 8; Bacteria - 10; Metazoa - 6191; Fungi - 1629; Plants - 2029; Viruses - 3; Other Eukaryotes - 2651 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0070EMBL:AC012328EMBL:AY085011
EMBL:BT004032EMBL:BT005084EMBL:CP002686EnsemblPlants:AT3G03120
EnsemblPlants:AT3G03120.1entrez:821079Gene3D:3.40.50.300GeneID:821079
GO:GO:0005525GO:GO:0005622GO:GO:0007264Gramene:AT3G03120.1
hmmpanther:PTHR11711hmmpanther:PTHR11711:SF168HOGENOM:HOG000163691InterPro:IPR005225
InterPro:IPR006689InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT3G03120
KO:K07977OMA:RRWHVQAPfam:PF00025Pfscan:PS51417
PhylomeDB:Q9M9N1PRINTS:PR00328PROSITE:PS51417Proteomes:UP000006548
RefSeq:NP_186962.1SMR:Q9M9N1STRING:3702.AT3G03120.1SUPFAM:SSF52540
TAIR:AT3G03120tair10-symbols:ARFB1Ctair10-symbols:ATARFB1CTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.41029UniProt:Q9M9N1
Coordinates (TAIR10) chr3:+:717345..718914
Molecular Weight (calculated) 21744.40 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.14
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM RGAMSPREVC EGLGLLDLKN RKWHIQGTCA LQGDGLYEGL DWLSATLKEV KAAGYSSVGP SF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)