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AT3G03180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.674
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Got1/Sft2-like vescicle transport protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 449 Blast hits to 449 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 113; Plants - 94; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5120eggNOG:KOG1743EMBL:BT010925EMBL:BT011636
EMBL:CP002686EnsemblPlants:AT3G03180EnsemblPlants:AT3G03180.1entrez:821059
GeneID:821059GO:GO:0016021GO:GO:0016192Gramene:AT3G03180.1
hmmpanther:PTHR21493hmmpanther:PTHR21493:SF9HOGENOM:HOG000035939InterPro:IPR007305
KEGG:ath:AT3G03180OMA:MASLEMNPfam:PF04178PhylomeDB:Q6NMM1
Proteomes:UP000006548RefSeq:NP_186968.2STRING:3702.AT3G03180.1TAIR:AT3G03180
TMHMM:TMhelixUniGene:At.41020UniProt:Q6NMM1
Coordinates (TAIR10) chr3:+:733531..734421
Molecular Weight (calculated) 15717.90 Da
IEP (calculated) 11.02
GRAVY (calculated) 0.85
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLEMNDLK KIGLGLTGFG VFFTFLGVIF VFDKGLIAMG NILFLAGVTL TIGINPAIQF FTKRQNFKGT ISFGLGFLLV VFGWPIFGLL LESYGFLVLF
101: SGFWPTLAVF LQRIPLLGWL LQQPYIRSLL DRYRGRRVPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)