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AT1G75760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ER lumen protein retaining receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G19970.1); Has 891 Blast hits to 891 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 315; Fungi - 179; Plants - 231; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5196eggNOG:KOG3106EMBL:AK227933EMBL:BT005213
EMBL:CP002684EnsemblPlants:AT1G75760EnsemblPlants:AT1G75760.1entrez:843909
GeneID:843909GO:GO:0005783GO:GO:0006621GO:GO:0016021
GO:GO:0046923Gramene:AT1G75760.1hmmpanther:PTHR10585hmmpanther:PTHR10585:SF34
HOGENOM:HOG000231400InterPro:IPR000133KEGG:ath:AT1G75760OMA:KASYMDD
PANTHER:PTHR10585Pfam:PF00810PhylomeDB:Q84TL5PRINTS:PR00660
Proteomes:UP000006548RefSeq:NP_177704.1STRING:3702.AT1G75760.1TAIR:AT1G75760
TMHMM:TMhelixUniGene:At.34735UniProt:Q84TL5
Coordinates (TAIR10) chr1:-:28446940..28448421
Molecular Weight (calculated) 30697.40 Da
IEP (calculated) 9.30
GRAVY (calculated) 0.69
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAATRPIHA VTTWVRRQPP KVKGFLGVVS AMTALVLLRV IVHDHDNLFV AAEAVHSLGI SVLIYKLTKE RTCAGLSLKS QELTALFLAV RLYCSFVMEF
101: DIHTLLDSAT LVTTLFVIYM IRFKLKASYM DDKDNFAIYY VVIPCVVLSV LIHPSTHHHI INKISWAFCV YLEAVSVLPQ LRVMQNTKIV EPFTAHYVFA
201: LGIARFLSCA HWVLQVLDTR GRLLTALGYG FWPIMVLLSE IVQTFILADF CYYYVKSLMG GQLVLRLPSG VV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)