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AT5G19200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G06060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:1.1.1.102eggNOG:ENOG410YF8MeggNOG:KOG1210EMBL:AC069326
EMBL:CP002688EnsemblPlants:AT5G19200EnsemblPlants:AT5G19200.1entrez:832040
Gene3D:3.40.50.720GeneID:832040Genevisible:F4JZN6GO:GO:0005789
GO:GO:0016021GO:GO:0030148GO:GO:0047560Gramene:AT5G19200.1
hmmpanther:PTHR24320hmmpanther:PTHR24320:SF1InParanoid:F4JZN6InterPro:IPR002347
InterPro:IPR016040InterPro:IPR020904iPTMnet:F4JZN6KEGG:ath:AT5G19200
KO:K04708OMA:PAMKAREPaxDb:F4JZN6Pfam:F4JZN6
Pfam:PF00106PhylomeDB:F4JZN6PRIDE:F4JZN6PRINTS:PR00081
PRO:PR:F4JZN6PROSITE:PS00061ProteinModelPortal:F4JZN6Proteomes:UP000006548
Reactome:R-ATH-1660661RefSeq:NP_197421.1scanprosite:PS00061SMR:F4JZN6
STRING:3702.AT5G19200.1SUPFAM:SSF51735TAIR:AT5G19200TMHMM:TMhelix
UniGene:At.31321UniPathway:UPA00222UniProt:F4JZN6
Coordinates (TAIR10) chr5:+:6458995..6460690
Molecular Weight (calculated) 35836.70 Da
IEP (calculated) 9.72
GRAVY (calculated) 0.28
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIFSLFLF FILFIVSLLI ILSFIVRPRS VTIPIKFRHV FITGGSSGIG LALAHRAVSE GAKVSILARS TEKLAEAKRS IQLATGVEVA TFSADVRDYD
101: AVSKAIDESG PIDVLIVNQG VFIGKELEKQ SPEEVKFMID VNLTGSFNVI KAALPAMKAR EGRGPASISL VSSQAGQAGI YGYTAYSASK FGLQGLAQAL
201: QQEVISDGIH VTLLFPPDTD TPGFEQELKK RPELTSIIAA SSGSMKTNEV AKICFDGIKA GKFTVTCHFI GFLLSIASTG MSPQGSFWLA LTEVMFGGLI
301: RLASLVFQWQ WYKTIEKWSQ RNKKEVNSKL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)