AT1G34630.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.790 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:12685317..12687435 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52787.30 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 10.00 | ||||||||||||||||||||||||||||
GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||
Length | 481 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE 101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP 201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG 301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE 401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)